Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq469 143 3e-29 >seq469 Length=114326 Score = 143 bits (158), Expect = 3e-29 Identities = 324/482 (67%), Gaps = 9/482 (2%) Strand=Plus/Minus Query 159304 CAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA--ATCCAAGCATACC 159361 || || ||| | || |||||||||||| ||| || || | || ||| | || |||| Sbjct 45707 CAGCCCAACTCTGGTGCACAGGGTGAGTTTGCTGGTCT--TCGCTGTATCAAGGCTTACC 45650 Query 159362 ATCAAGGATCAGGA-GATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGA 159420 | | ||| || || | ||||| |||| || || | || || | || || || || Sbjct 45649 A-CGAGGCTCGTGATGGAGATAAGCGAAAGGTCTGCCTTATCCCTGTTTCGGCTCACGGT 45591 Query 159421 ACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT 159480 || || ||||| || || | ||||| || ||||| ||||| |||||||||||| | | Sbjct 45590 ACCAACCCTGCTTCTGCTGCCATGGCTGGTATGAAGGTTGTTACTGTCAAGTGTGACGGT 45531 Query 159481 GA---TGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAA 159537 | ||||||| | || ||| | ||||| || || ||| | | | |||| Sbjct 45530 AAGACTGGCAACCTGGATATCGAGGATCTGAAGGCCAAGTGTGTCAAGCACGCTGATGAA 45471 Query 159538 CTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA 159597 || | ||| ||| |||| ||||| ||||| ||||| || || | | |||| Sbjct 45470 CTTGCTGCTATCATGGTTACCTATCCCTCTACTTTCGGTGTCTTCGAGCCTGAGATCAAG 45411 Query 159598 CAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTA 159657 || | ||| | |||| || ||| |||| |||| || || | || ||||| || | Sbjct 45410 CAAGTCTGTGATCTTGTCCACGAGCATGGCGGTCTCGTCTACATGGACGGTGCCAACATG 45351 Query 159658 AATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAAC 159717 || || ||| | ||||| | || ||||| |||||| ||||| || ||||| ||| Sbjct 45350 AACGCCCAGATCGGTCTTTGCAGCCCCGGTGACATTGGTGCTGATGTTTGCCATCTCAAC 45291 Query 159718 TTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGT 159777 | || ||||| ||||||||||| || || || || ||||| || || || ||||| | | Sbjct 45290 CTCCACAAGACCTTCTGTATTCCCCACGGCGGCGGTGGTCCCGGTGTTGGCCCTATCGCT 45231 Query 159778 GT 159779 || Sbjct 45230 GT 45229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588036660434080