Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1180 149 1e-30 seq1658 147 5e-30 seq1 138 3e-27 >seq1180 Length=846099 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| || || || ||||| ||||| |||| |||||||| ||||| || Sbjct 496772 AACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTC 496831 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || |||||||||||||| ||||| || |||||||| || || ||||| || Sbjct 496832 AAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTG 496891 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || || |||||||| || || || ||||| || |||| ||||| Sbjct 496892 GATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTT 496951 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | |||||| Sbjct 496952 TCCAGTGAGGGTCTTGACGAAGATTTGCAT 496981 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| ||||| || ||||| |||||||| | ||||| | || || || Sbjct 497282 AACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTC 497341 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || | ||||| ||||| || |||||||| || ||||| || Sbjct 497342 AAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 497401 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || || || ||||| ||| || || || ||||| | ||||| Sbjct 497402 AATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTT 497461 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 497462 GCCGGTCAAGGTCTTGACGAAGATCTGCAT 497491 Score = 129 bits (142), Expect = 1e-24 Identities = 164/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCT 194981 |||| | ||| ||||||||||| ||||| || || || ||||| ||| |||| || | Sbjct 496536 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCG 496594 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | ||||||||| ||||||||||| || || || || || ||||| || || Sbjct 496595 ACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTC 496654 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGG 195099 ||||| ||||| || ||| ||||| || || |||| | | || || || |||||| Sbjct 496655 CTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGAC--TCGACCTCAAGG 496712 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || | ||| || || || | ||||| Sbjct 496713 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 496753 >seq1658 Length=732392 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||| || || | ||||| ||| Sbjct 133535 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 133476 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||||||||| || ||||| || || ||||| || ||||| || Sbjct 133475 AGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 133416 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | |||||| Sbjct 133415 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 133356 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 133355 CCCGTGAGGGTCTTGACGAAAATCTGCAT 133327 >seq1 Length=687238 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||||||| ||||| |||||||||||||| |||||||| Sbjct 238147 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 238206 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| |||||||| || |||||||| || ||||| || || || |||||| || || Sbjct 238207 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 238266 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 238267 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 238325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109453482269126