Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10]
1,978 sequences; 48,996,880 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1180 109 4e-19
>seq1180
Length=846099
Score = 109 bits (120), Expect = 4e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||||||||||||||| || || || ||||| ||||| | |||| | | || || | |||
Sbjct 497006 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTG 497065
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| |||| ||||| || || || || || || || ||||| ||||| ||
Sbjct 497066 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTT 497125
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| || ||| | || | || || |||| || || |||||||||| || ||||| ||
Sbjct 497126 TGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 497185
Query 101446 TAAAGTTTTTACAAATAT 101463
| || || || | |||
Sbjct 497186 GAGGGTCTTGACGACTAT 497203
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| || || || |||||||| || || || ||||| |||| | ||||| | |
Sbjct 496766 ACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCC 496825
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| || | |||||| || || || || | |||||||||||||| ||||| || || ||
Sbjct 496826 ATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGGAGGAATACCCTCCTT 496885
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| || || || || ||| | || | || || || | || ||||| ||||| |
Sbjct 496886 GTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAAT 496945
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || || | || || || || || |||||
Sbjct 496946 GGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 496981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396268846966146
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |