Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1580 206 3e-48 seq1757 125 9e-24 seq1336 87.8 2e-12 >seq1580 Length=534993 Score = 206 bits (228), Expect = 3e-48 Identities = 1135/1781 (64%), Gaps = 51/1781 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || | | || || || || || || || || Sbjct 382349 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 382290 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 75328 ||||||||||||| || ||||||| || | | |||| || || | || || ||| Sbjct 382289 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCCTCTCCCACGCTC 382232 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||||| || || || || || || |||| ||||||| | | | | ||||| Sbjct 382231 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 382172 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 382171 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 382112 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || |||||||| || || | || | | | || | | || ||| || || Sbjct 382111 GGTGGTATTGGCCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGTACC 382052 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || ||| ||| | ||| || |||| |||||||| || || ||| ||| || |||||| Sbjct 382051 AACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 381992 Query 75569 GTAAATCAAGCGGGGCGTC--GCAAGG-GGTCCATC-GCGGTCTACTTGGAACCATGGCA 75624 || | || | | ||| | || | ||| | | || ||||| | || || ||||| Sbjct 381991 GTCGACCAGG-GTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 381933 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 | || || | ||||||||||| | || ||||| ||| | || |||| || ||| Sbjct 381932 CTCTGACGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGG-TCCGTG 381874 Query 75685 TA-GAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | || || |||| || ||| ||||| || || |||||||||||||| ||||| | Sbjct 381873 CCCGTGACCT--TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAA 381816 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 | || | ||| | || | || || || || || || ||| ||||| || Sbjct 381815 GAACGGCGACTGGACGCTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGTTACGG 381756 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGAC 75858 |||||||| || || || ||| |||||| || ||||||| | | ||| ||| Sbjct 381755 AGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAA---GAC 381699 Query 75859 TGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 | | | || | | || ||||| | || ||||| | | ||||| ||||| |||| | Sbjct 381698 TAT-CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 381640 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 ||| ||||| ||||||||||| || ||| ||||| ||||||||||| | || || | Sbjct 381639 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCA 381580 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 || ||||| || || ||||| |||||| | |||||| | || ||| |||| Sbjct 381579 TCCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTG 381520 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT---GAAGAGACTCGCACTT 76094 | ||||| | || || | || || || | |||| || ||| || || | Sbjct 381519 TCTGCAACCTTGCCTCTCTGGCTCTGCCCTCTTTCATCAACTACGATGAGGCTTGC---T 381463 Query 76095 TTGATTATGAAAAACTT-CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 ||| | | || || || || | ||| || |||||| || || ||| || Sbjct 381462 ATGACT-TCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATC 381404 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || || || || || || || || || || ||| ||||| ||| |||| Sbjct 381403 ATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCC 381344 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTTGA 76272 |||||| | |||||||| || || || |||| || || | ||| | | | || || Sbjct 381343 ATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTGCGCATGCCC-TTCGA 381285 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 ||| || || ||| | || | ||||| || ||||| || ||||| |||| Sbjct 381284 GTCACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCT 381225 Query 76333 GGAGGCGAGTTGTGAAT-TGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 || ||| | ||||| | | | ||| |||| || || | ||||| | Sbjct 381224 CACTGCCTCC-GTGCAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCC 381166 Query 76392 CCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG 76451 |||| || | || | || ||||| || |||||| || || || || || | || | Sbjct 381165 CCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGG-AACGTCAAGCCCT-CTGACCTCTG 381108 Query 76452 --ACTGGGA---TGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506 ||||||| | ||| ||||| ||||| | || | ||||||||||| | Sbjct 381107 GGACTGGGAGACTCTTCGAGAGGAAG---TCAAGACACACGGCATCCGTAACAGTCTGCT 381051 Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566 | || || ||||| || ||| ||| | || || |||| || || || ||||| || Sbjct 381050 CCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGA 380991 Query 76567 ACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626 || ||||| | |||||||||| || | ||||| |||||||| ||||||| Sbjct 380990 GCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAA 380931 Query 76627 CAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 76686 | || |||| ||||| | || ||||| |||||| | | ||||||| | | Sbjct 380930 CCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCG 380871 Query 76687 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAA 76746 ||| | | | |||||||||||| || || | | ||||| | ||| ||||| Sbjct 380870 CATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGC 380811 Query 76747 TCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCG 76806 ||| || || || ||||| ||| | | ||| || | ||||| || ||||| Sbjct 380810 TCTGTATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCG 380751 Query 76807 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATG 76864 ||| ||||||||||| |||| ||| |||| | |||| || || || ||| Sbjct 380750 AGGTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACAATG 380693 Query 76865 TCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTA 76923 |||| || | |||||| | || | || ||||| | || ||||| || || ||||| Sbjct 380692 GGCAAGATCACCAGTATGCACTTTGCAGGC-TGGAAGCTTGGCCTCAAGACTGGCATGTA 380634 Query 76924 CTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||| || || || |||| || || |||||||||| Sbjct 380633 CTACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCA 380593 >seq1757 Length=1535963 Score = 125 bits (138), Expect = 9e-24 Identities = 334/504 (66%), Gaps = 20/504 (4%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || |||| | | | || | ||| |||||| ||| |||| Sbjct 1424778 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTC-CTCCTTTGCCCAGCG 1424720 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || ||| ||||||||||||||| || | ||| | |||| | Sbjct 1424719 TCTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTT 1424660 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || |||||| || || || || || || Sbjct 1424659 CTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 1424600 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA---TAG 65258 ||||||||||| ||| || |||||| || ||| || | || | || | | Sbjct 1424599 TGATGAGGGTCTTCACACTGACTTTGCC-TG--CCTCCTCCACTCTCACCTCAAGGGTCG 1424543 Query 65259 ACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 ||| | | | ||||| | ||| | | || || || |||||| | | ||| Sbjct 1424542 TGCCAGCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTT 1424483 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 | || || || || || || || |||| ||||||||||| ||| |||| Sbjct 1424482 CCTCACTGAGGCTCTTCCCTGCGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTA 1424423 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTG-GGGTGCCACCCA-----TTTG 65432 |||||||| || | ||||||||||| || | | || || | | ||| Sbjct 1424422 CATTGAGTTCGTCGCTGATCGTCTCCT------TGTCGCGCTTGGCAACGAGAAGGTTTA 1424369 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 || || | || || || ||||| ||||| ||||| ||| | ||| ||||||||||| Sbjct 1424368 CAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTT 1424309 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| |||| ||||| Sbjct 1424308 CTTCGAGAAGCGTGTTGCCGACTA 1424285 >seq1336 Length=1150815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27858 GCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCC 27917 |||||| || |||||||| || ||||| || || | ||| ||||||||||| || Sbjct 81916 GCGCTCCAGAACAAGTTGAGCAATGCGGTCGCCCTCCTTCACCTCAAAGTCGGATTCGTT 81975 Query 27918 GTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACC 27977 || |||||||| | ||| ||||| | ||| || |||| ||| || ||||| || || Sbjct 81976 ATGGTTGAAGAGCAGGACCTTGACCTGACCGCGGTAATCGGCATCGATGACACCAGCGCC 82035 Query 27978 AACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCAT 28030 | ||| |||||| ||||||||| ||||| || |||| || |||| Sbjct 82036 TGTGTCAATGAAATGCTTGGAAGCGAGACCCGATCGAGGGGCAATGCGTCCAT 82088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596554849816640