Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1580 230 3e-55 seq1757 129 7e-25 seq1336 87.8 2e-12 >seq1580 Length=534993 Score = 230 bits (254), Expect = 3e-55 Identities = 1141/1786 (64%), Gaps = 47/1786 (3%) Strand=Plus/Plus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| || ||| Sbjct 380586 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 380645 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | || | |||||| | || |||| ||| || || Sbjct 380646 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATTGTGGGGTC 380704 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 || |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 380705 TTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 380762 Query 110501 ATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560 || | || ||| | | || |||||||| || ||| ||| ||||| ||| Sbjct 380763 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCG 380822 Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATA 110620 | ||||| | | || ||||| |||||||| | | | ||| | | ||||||| Sbjct 380823 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATA 380882 Query 110621 TCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACA 110680 | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 380883 GCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGG 380942 Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||| ||||| | || |||||||||| | ||||| || || ||||| || Sbjct 380943 AACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCG 381002 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || || |||| || || | ||| ||| || ||||| || || | | ||||||||| Sbjct 381003 TTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTA 381062 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--AGCT 110855 || | || | ||||| ||||| ||| | |||||||| || | || Sbjct 381063 CGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG 381119 Query 110856 TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAA 110915 || || || |||| ||||||| ||||| || | || | || ||||| ||||| | | Sbjct 381120 -GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGA 381177 Query 110916 AGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGA 110974 |||| |||| ||| | | | ||||| | ||| | || |||| ||||| Sbjct 381178 AGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGTGG 381236 Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034 || ||||| || ||||| | || | ||| || || ||| || || | | Sbjct 381237 TAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 381296 Query 111035 CGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 || || | || || |||| || || || |||||||| | |||||| |||| ||| || Sbjct 381297 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 381355 Query 111094 CATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 111153 ||| ||| || || || || || || || || || |||| ||| || Sbjct 381356 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 381415 Query 111154 ATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGTCT 111212 || |||||| || ||| | || || || || | | ||| | || || || Sbjct 381416 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCATA---GCAAGCCT 381471 Query 111213 CTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 | || | ||| | || || || | || || | ||||| ||||| ||| | Sbjct 381472 CATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGT 381531 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 | | |||||| | |||||| || || | |||||| || || || || | | Sbjct 381532 CAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGT 381591 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 |||||||||| ||||| |||||| |||||||||||||||||| | || | || |||| Sbjct 381592 TCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCT 381651 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGC 111447 | ||||| | | ||||| || | ||||| || | | | || || | || | | Sbjct 381652 CAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGC---GAC 381708 Query 111448 CCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG 111506 || | |||||| |||||||||| ||| || || || |||||||| || ||||| Sbjct 381709 CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAACAGTCGG 381768 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCT 111566 ||| || || || || || || | || | ||| | || | ||||| |||| Sbjct 381769 CGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCT 381828 Query 111567 TCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTT 111623 |||||||||| || || ||||| ||| || |||| || || | ||| || |||| | Sbjct 381829 TCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGGCACGGA-CCTCCT 381885 Query 111624 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | | ||| ||||| || | ||||||||||| | || || | |||||| ||||| | Sbjct 381886 CTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACGTCAGAGTGCCAAGGCTCGA 381945 Query 111684 GATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGG 111740 | |||| || | || || ||| ||| | || | |||||||| || ||| Sbjct 381946 GGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGT 382005 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 111800 ||| || || |||||||| |||| || ||| | ||| ||| || || || ||| Sbjct 382006 TGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCAATGT 382065 Query 111801 GAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGA 111860 || | | || | | | || | || || |||||||| |||||| ||| |||| Sbjct 382066 AGGAGCCAGTAGCACGGATACGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGGAGA 382125 Query 111861 TTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGA 111920 | ||||| | | ||||| | ||||| || | || ||| ||||| | | | Sbjct 382126 TCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAA 382185 Query 111921 TAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTG 111980 | ||||||| |||| || || || || || || |||||||| || || | | Sbjct 382186 CCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGG 382245 Query 111981 CGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 112038 | || |||| | | || ||||||| || ||||||||||||||| || || || Sbjct 382246 CATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATC 382303 Query 112039 TTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || | | || ||||||| ||||| ||| ||| Sbjct 382304 ATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGG 382349 >seq1757 Length=1535963 Score = 129 bits (142), Expect = 7e-25 Identities = 529/819 (65%), Gaps = 29/819 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| | ||| ||||| ||||| Sbjct 1424285 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 1424344 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484 ||||| || || || | || || ||| | | || || | | || ||| Sbjct 1424345 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 1424398 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || |||||||||||| ||| ||||||||||| |||| ||| Sbjct 1424399 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 1424458 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || || || || || || |||| | | |||||| || || || | | ||| Sbjct 1424459 GCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 1424518 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | ||||| | | | ||| | | || | || | || ||| || |||| Sbjct 1424519 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 1424575 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| ||||||||||| || || || || || || |||||| ||||| ||| Sbjct 1424576 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 1424635 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||| Sbjct 1424636 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 1424695 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCA 122840 || ||| || || |||| || || | ||| |||||| ||| ||| | | | ||| Sbjct 1424696 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 1424754 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900 | || ||||| | |||||||| || || || | || | ||||| | ||| | Sbjct 1424755 TCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAG 1424814 Query 122901 CT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGC 122959 | | ||| | | ||||| ||||| ||||||| | || || || ||| Sbjct 1424815 GTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGG 1424873 Query 122960 CATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGA 123018 || | | | ||| ||| | || | ||||||| | || || ||| ||||| Sbjct 1424874 AGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAACGAGCCTCGGGGATCTGG 1424932 Query 123019 ACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 123077 ||||| || | ||| | | || ||||| ||||| ||||| ||| |||| || Sbjct 1424933 ACCTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAA 1424991 Query 123078 GAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTC 123134 ||| || ||||||| | ||| || |||| || ||| || | |||||||| Sbjct 1424992 GAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTC 1425051 Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | ||||| ||||| | ||||| || || |||||||| Sbjct 1425052 ATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 1425090 >seq1336 Length=1150815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 82088 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 82029 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| | ||||| ||| | |||||||| || || Sbjct 82028 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 81969 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 81968 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 81916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016471908800