Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1580 255 7e-63 seq1757 147 3e-30 >seq1580 Length=534993 Score = 255 bits (282), Expect = 7e-63 Identities = 1143/1783 (64%), Gaps = 41/1783 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| ||| | | |||||| || || || || || || Sbjct 382349 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 382290 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||||| || | | |||| || || | || || ||| Sbjct 382289 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCCTCTCCCACGCTC 382232 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || || || || |||||| |||| ||||||| | | | | ||||| Sbjct 382231 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 382172 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 382171 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 382112 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| || || | || | | | || | | || ||| || || Sbjct 382111 GGTGGTATTGGCCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGTACC 382052 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| ||| | ||| || |||| |||||||| || || ||| ||| || |||||| Sbjct 382051 AACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 381992 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | ||| ||| || || | || |||| || ||||| |||||| Sbjct 381991 GTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCAC 381932 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 | || || | ||||||||||| | ||| ||||| ||| | ||||||| || | Sbjct 381931 TCTGACGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCC 381872 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || || ||| ||| || ||||| || ||||| ||||||||| | ||||| ||| Sbjct 381871 CGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAAC 381812 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT--GGGTG 104813 ||| | ||| | || | || || || || ||||| ||| |||| | || || | Sbjct 381811 GGCGACTGGACGCTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGA--CTGTTACGGAG 381754 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871 ||||||| || || || ||| ||||||||| |||| ||| | | | | || ||| | Sbjct 381753 AGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT 381696 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 ||| | | ||| | || ||||| || | || || ||||| || | |||| Sbjct 381695 CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATT 381636 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||| ||||| || ||||| |||| ||||| || |||||||| | ||| ||| Sbjct 381635 CATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCG 381576 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 || ||||| || || || ||||| | || | | | || ||| ||||| || Sbjct 381575 AAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTG 381516 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG--AT 105109 ||||| || || | ||||| ||| | | | || || || | || ||| || Sbjct 381515 CAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCTAT 381461 Query 105110 TA--TGAA-AAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 | | || || | ||| | || | | ||| | ||||| |||| | || Sbjct 381460 GACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATC 381401 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || ||||| || || ||||| || ||| ||| | ||||| || ||| Sbjct 381400 GATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCATT 381341 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285 ||||| ||||||||||| || || |||| ||| || || || ||| | || || || Sbjct 381340 GGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGAGTC 381282 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 ||| || || |||| || || || |||||||| || ||||| || || Sbjct 381281 ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCAC 381222 Query 105346 GGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 || || | || |||| ||| || ||||| || ||||| | ||||| || Sbjct 381221 TGCCTCCGTGC--AGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCC 381164 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463 || || | || | || || || || |||||| | | || || | || ||| Sbjct 381163 GCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGAC 381104 Query 105464 TGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||||| ||| || || | | | ||||| | || | ||||||||||| ||| | | Sbjct 381103 TGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCTCCTTG 381046 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||| ||| | || || |||| || || || ||||| || |||| Sbjct 381045 CTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCT 380986 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 |||| | |||||||| | || | ||||| || ||||| | |||||||| Sbjct 380985 ACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCT 380926 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701 || | | ||||| || || ||||| |||||| | | ||||||| | | ||| Sbjct 380925 GGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCA 380866 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 | | | |||||||||||| || ||| | || || || | ||| ||| Sbjct 380865 TTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGT 380806 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 | || |||||||| ||| | | ||| || | ||||| || ||||| ||| Sbjct 380805 ATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGTG 380746 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 ||||||||||| |||| ||| |||| || |||| || || || ||| ||| Sbjct 380745 CCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACAATGGGCAA 380688 Query 105880 GCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 105938 | || | ||||||| | | || | |||||| || ||||| || || ||||| |||| Sbjct 380687 GATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACC 380629 Query 105939 TCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981 | || | |||| || || |||||||||| | |||| Sbjct 380628 TTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 380586 >seq1757 Length=1535963 Score = 147 bits (162), Expect = 3e-30 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 |||||| | ||||| | || | || || || | |||||| || || ||||| || Sbjct 1424814 CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGA 1424755 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | | || | | | | ||||||| |||| ||| | || || || |||||| Sbjct 1424754 TGGATCCAGGATAAGGACTCCT-CCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGTTGA 1424696 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 ||||||||||||| |||| ||||| | |||| | |||||||||||||| |||||||| Sbjct 1424695 GGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 1424636 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 ||| ||||| ||||||||||||||| ||||||||||| ||||| || ||| || || Sbjct 1424635 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTT 1424576 Query 94953 TGC 94955 ||| Sbjct 1424575 TGC 1424573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246378876720