Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F001703125.1_202016-08-10] 1,978 sequences; 48,996,880 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1580 159 5e-34 >seq1580 Length=534993 Score = 159 bits (176), Expect = 5e-34 Identities = 551/851 (65%), Gaps = 14/851 (2%) Strand=Plus/Plus Query 77759 GATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAA 77818 ||| || || || || | |||||||||||| ||||| | ||||| || || || || Sbjct 381578 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 381637 Query 77819 CGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA 77877 || | ||||| ||| |||| | || | ||| | | ||| | | ||| ||| || | Sbjct 381638 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 381696 Query 77878 TCATAGATTTGTATCGCCT---CTCTCTTTCATA--TTGAGTATATAGCCGTTCAAATTC 77932 | || ||| | | | ||| | || || || ||| | |||| || || || Sbjct 381697 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACTC 381751 Query 77933 ATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACC 77992 ||||| || || | | |||||||| || || |||||||||| | |||||| || Sbjct 381752 CTCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCC 381811 Query 77993 ATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 | | | ||| || ||||| || |||||||| ||||| || || | || || || || Sbjct 381812 GTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACG 381871 Query 78053 GGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGA 78112 || | || || || || ||||| ||||| || ||||| | | ||||| Sbjct 381872 GGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACGTCAGA 381931 Query 78113 ATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTAT 78172 ||||| || || || || || || | | | || ||||| || || || ||||| || | Sbjct 381932 GTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGAC 381991 Query 78173 ATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATT 78232 ||| | || ||||| || | || | | ||| |||| || |||||| ||||| || || Sbjct 381992 ATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTT 382051 Query 78233 TGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCC 78292 || || | ||| || ||| | || || ||| | | | || || || || Sbjct 382052 GGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGGCCAATACCACC 382111 Query 78293 TGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTC 78352 |||||||| || || | || || || | ||||||||||| ||||| |||||||| Sbjct 382112 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 382171 Query 78353 ATCCATCATGTTAA-GAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 78411 ||| |||| | || ||||| || | |||| ||| | ||| || || || || | Sbjct 382172 GTCCTTCATATCAACCAAGAAGCAAGAT-GACAATTGGGGCTGAGGGGTGCCGGCGTTGA 382230 Query 78412 ATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAG 78471 | | || ||||| ||||| || || |||| || | || |||||||| || | Sbjct 382231 AGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGA 382290 Query 78472 CTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTC 78531 || || || || ||| || || | |||||||| | ||| |||||||| | Sbjct 382291 CTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGC 382350 Query 78532 TTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAA 78591 || || ||||| | || || | | ||||||| |||||||| || || |||| Sbjct 382351 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 382410 Query 78592 AATAGTTGTAT 78602 | || | |||| Sbjct 382411 AGTATTGGTAT 382421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651624313920