Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1023 289 3e-73 seq990 136 4e-27 seq890 111 1e-19 seq335 107 2e-18 >seq1023 Length=1138890 Score = 289 bits (320), Expect = 3e-73 Identities = 638/954 (67%), Gaps = 2/954 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || |||||||| || |||||| | |||||| || || Sbjct 1136744 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCAC 1136803 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || || ||||| | |||| Sbjct 1136804 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 1136863 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 1136864 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGT 1136923 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | | ||| || ||| ||| || | ||||||||||| ||||| || Sbjct 1136924 TTCTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 1136982 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || | ||||| |||||||| ||||| || | | | || ||||| || | Sbjct 1136983 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGT 1137042 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || |||||||| || |||| |||||||| || ||||| || ||| ||| Sbjct 1137043 CCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAA 1137102 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || || ||||| || ||||||||||| ||| |||||| | ||| | || || || Sbjct 1137103 AAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 1137162 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 || || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| || Sbjct 1137163 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 1137222 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| || || || ||||||||| | || | ||||| || || | |||||| || Sbjct 1137223 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 1137282 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || || | || || | || || | ||| |||| | ||| Sbjct 1137283 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 1137342 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| || || || ||||| |||||||| ||||| Sbjct 1137343 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1137402 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 || ||||| || || | | |||||||| || || |||| ||| | | || || | Sbjct 1137403 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1137462 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 ||| ||| || || || ||| || || ||| || | ||||| || ||||| || Sbjct 1137463 GGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGT 1137522 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | || || || || || ||||| | | || ||||| ||||||| Sbjct 1137523 CTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTG 1137582 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 ||||| | |||||| | |||| ||| |||| || ||||| || | || || || Sbjct 1137583 CTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTT 1137642 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || ||||| || | || | || || || || | || ||||| || | ||| Sbjct 1137643 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 1137696 >seq990 Length=469732 Score = 136 bits (150), Expect = 4e-27 Identities = 542/838 (65%), Gaps = 25/838 (3%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||||| || || | || || Sbjct 111220 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCTGAGGAGATTGATCTT 111279 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAATTTTA--TTAA 57685 || |||||||| || ||| | || | || | | || ||| | || | | Sbjct 111280 TCCAAGGATCTCCATGACTGGAACAACCGCCT-GACTGCCGATGAGCAGTTCTTCGTCTC 111338 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| | | || || ||||| || || ||||||||||| |||||||| | ||||| | Sbjct 111339 TCACATCCTTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 111398 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| || || || | | ||||| | ||||| ||||| || || | || Sbjct 111399 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 111458 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || ||| | || || || | || || || ||||| || || ||| | ||||| || Sbjct 111459 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGC 111518 Query 57866 CGAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 || ||| || || || ||||| || || || || ||| ||| |||||||| | Sbjct 111519 TCAGCGAACCTA-CCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCG 111577 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCG 57981 | ||| | ||| |||||| | | | || || | || ||| || | || | | Sbjct 111578 ACTGGGCCATCCGATGGATCCA---GGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 111634 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | ||||| || || || ||||| ||||| || ||| || | || || ||| | | Sbjct 111635 CTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCA 111694 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| || || || |||||||| ||||| || ||||||| | || || || || |||| Sbjct 111695 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 111754 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACCGACG 58157 |||| || ||||| ||||| ||||| | |||||||| | ||| | | | | Sbjct 111755 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGC-AAG 111813 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | ||| ||| ||| || || || || || ||| | || || | ||||| |||| Sbjct 111814 C-AGAT--GATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACT 111870 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || || ||| | ||||| |||||| ||| | ||| ||||||||||| Sbjct 111871 GAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAG 111930 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAA 58335 || || || || | || | ||| || | |||| || |||||| | | | Sbjct 111931 TTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGT--TTACAAGGCCACCA 111988 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | || || || || ||| | ||||| || | |||||||| ||||| ||||| || Sbjct 111989 ACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAA 112046 >seq890 Length=577872 Score = 111 bits (122), Expect = 1e-19 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || || || |||||| | || ||||| |||| Sbjct 198924 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGA---GTCC 198868 Query 31253 ---GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | |||| | || || | || ||||||||| || | || || || Sbjct 198867 AGTGACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGAT 198808 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| || ||||||||||| | || ||||||| || Sbjct 198807 CAGCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTAC 198748 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || || || || |||||||| || || || |||| Sbjct 198747 AACATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 198707 >seq335 Length=1294100 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 506514 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 506573 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 506574 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 506633 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||||| || || || |||||||| ||| | || || | | | || ||||||| || Sbjct 506634 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA-TGGACGCACCCTGAGCGACTA 506692 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 506693 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 506728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759284453840