Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27]
1,277 sequences; 50,403,639 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq890 104 2e-17
seq335 87.8 1e-12
>seq890
Length=577872
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || |||||||||||| || ||| | || ||||| ||
Sbjct 198722 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGC 198781
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851
|| || || | ||||| ||||| || || || | ||||| ||||| ||| |||
Sbjct 198782 TTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTG 198841
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
|| |||||| | | | | |||||| | || ||| || | ||||||||| ||||||||
Sbjct 198842 CT-CTTCACGTTGTCGATAGTGTCACTGGACTCAACCTCAAGGGTGATGGTCTTTCCGGT 198900
Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||||||||||||
Sbjct 198901 GAGAGTCTTCACAAAAATCTGCAT 198924
>seq335
Length=1294100
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || |||||||||||| || ||| | |||
Sbjct 506728 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 506669
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| ||| | || || ||||| ||||| || | |||||| |||||
Sbjct 506668 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 506609
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | ||| || | | | | |||||| | |||| || | |||||| ||
Sbjct 506608 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 506549
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || || || || ||||| ||||||||||| |||
Sbjct 506548 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 506513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405081695438230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |