Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq990 140 7e-28 seq1023 109 1e-18 seq398 109 1e-18 seq1123 105 1e-17 >seq990 Length=469732 Score = 140 bits (154), Expect = 7e-28 Identities = 386/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 112043 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 111984 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 111983 GCCTTGTAAACCTTCTCGTTGCCAAGCGCGACAAGGAGACGATCAGCGACGAACTCAATG 111924 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 111923 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 111864 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 111863 AACTCCTGCTCAATGGTGACGGCATCAGTAATGATATCCTGGATCATCTGCTTGCTGGCA 111804 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 111803 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 111751 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| |||| Sbjct 111750 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 111691 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | |||| ||| ||| | | |||||| ||| | | ||||| Sbjct 111690 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAAAGCAAC 111631 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 111630 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 111571 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | |||||| || || || || | |||||| || | |||| || || Sbjct 111570 CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCGCTGAGCGGGCTC 111511 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| || || ||||| |||| || |||||| Sbjct 111510 CTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 111465 >seq1023 Length=1138890 Score = 109 bits (120), Expect = 1e-18 Identities = 448/697 (64%), Gaps = 11/697 (2%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | |||||||| ||||||||||| | | || ||| | ||| Sbjct 1135966 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGA 1136025 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| ||||| |||| ||||||||||| | | | ||| || ||||| Sbjct 1136026 GATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTG 1136085 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 1136086 AATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG-T 1136144 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | || || || || | | ||||||||| ||||||||||||||||| || | Sbjct 1136145 CGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTC 1136204 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||| ||||| || ||| ||| ||| ||| || |||||| | | Sbjct 1136205 GTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGG 1136264 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACAC 293470 || || ||||||||| ||||| |||| ||| | | || | ||||||| Sbjct 1136265 TACTGGCCGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTT 1136324 Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATA 293528 | | ||| | |||||| |||||| ||| || || | || ||| | | | Sbjct 1136325 CCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCGAA 1136382 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 ||| | |||||||| ||| || || || | ||||||| | ||| || | ||| | Sbjct 1136383 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 1136442 Query 293589 AGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647 || |||| ||| || || | ||||| ||||||| ||||||||||| || Sbjct 1136443 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 1136501 Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707 |||||| ||||||| || || || ||||| ||| | ||| |||| | Sbjct 1136502 TGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAA 1136561 Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAA 293767 | ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| | | Sbjct 1136562 GGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGA 1136621 Query 293768 CCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | | || ||||||| ||| || ||| |||||| Sbjct 1136622 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 1136658 >seq398 Length=366238 Score = 109 bits (120), Expect = 1e-18 Identities = 177/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| ||||| | Sbjct 61796 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACCTTCTCTC 61737 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| |||||||| || ||| || | |||| |||||||||| | | Sbjct 61736 TTGCCTACGGTGCCAAGATTCTTCTCAACCAGACTCACCTCCGTCTCAAGCGTGGTCAGC 61677 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||||||||| || | || ||| |||||| ||||||||||| | Sbjct 61676 GTTACGGTCTTTGCGGTCCCAACGGTTCCGGAAAGTCCACTCTCATGCGCGCCATCAACA 61617 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | || || || ||||| ||| ||||| | ||| || | || |||||| Sbjct 61616 ACGAGCAGGTTGAGGGTTTCCCTAA-GCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 61558 Query 279555 GACATCGACTCC 279566 ||| | |||||| Sbjct 61557 GACCTTGACTCC 61546 Score = 102 bits (112), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| ||||| || ||||| ||||| || |||||||| || ||| Sbjct 60960 TCTCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 60901 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || || || ||||| ||| | ||||| |||| | | |||| ||||| Sbjct 60900 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 60841 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| | |||||||||||| |||||||| ||||| || |||| |||| Sbjct 60840 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACT 60781 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 60780 CCTTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 60722 >seq1123 Length=1347922 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639 |||| |||||||| ||||||| ||||||||| || | | |||| |||||| | || Sbjct 224060 CGTGCTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAA 224119 Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699 |||||| |||| | ||||||| | | || |||||||||| || || ||| ||| Sbjct 224120 CCTGGTCAAAGATAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCTGAGCAGACTGCCTA 224179 Query 218700 CCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759 |||||||||||| ||| ||| || | || | ||| |||| ||| ||| || || Sbjct 224180 CCATCACGGTGAACAGTCTCTCCAACAGACTATCATCGGCCTGGCCCAGAACTTCGTCGG 224239 Query 218760 CAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 |||||||| |||| ||| |||| || | || |||||||| || Sbjct 224240 TTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 224290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027819982983957