Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1023 190 2e-43 seq990 188 9e-43 seq1123 84.2 3e-11 >seq1023 Length=1138890 Score = 190 bits (210), Expect = 2e-43 Identities = 1166/1843 (63%), Gaps = 45/1843 (2%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 1135833 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 1135892 Query 113625 CCTGCTTCCAGGCATACATA-TGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 113683 | |||||||| | | || | ||||| || | |||| | || || || |||| Sbjct 1135893 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCTTTCATG 1135951 Query 113684 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATC 113743 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 1135952 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 1136011 Query 113744 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 113803 || | | ||| ||||| || || | || || ||| | ||| | ||||| Sbjct 1136012 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 1136071 Query 113804 TCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 113863 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 1136072 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 1136131 Query 113864 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 113923 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 1136132 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 1136191 Query 113924 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 113983 ||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| ||| Sbjct 1136192 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 1136251 Query 113984 AAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 114043 | || |||| ||| ||| || ||||| || || | ||| || |||||||||| || Sbjct 1136252 AGAATCTGGGAGGTACTGGCCGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 1136311 Query 114044 TTTTCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 114101 | | | | | | | | || || | | |||||||| || | | || | | Sbjct 1136312 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 1136369 Query 114102 GCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 |||||| || |||||||||||||| | ||||| || || || | || || ||| | Sbjct 1136370 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGG 1136429 Query 114162 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 | ||||| ||| |||| | ||||| || |||||| ||||| || || |||| Sbjct 1136430 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAAATGGTCT 1136486 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 114277 | || || | || | | |||||| || || || | | || || | | Sbjct 1136487 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCA 1136545 Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 | || |||| || || || || ||||| || ||||| || || || | ||| ||| Sbjct 1136546 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 1136605 Query 114338 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 || ||||| || || || || ||| |||||| | | | || || || | Sbjct 1136606 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATA 1136665 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 114454 ||||||| ||| | || | ||| | | | || | || || ||| || | || Sbjct 1136666 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 1136722 Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514 | | || || || | || || || || || |||| | ||| || || | Sbjct 1136723 ATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 1136782 Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574 ||||| |||||||| || |||| || || || ||||| || | ||||||||| || Sbjct 1136783 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 1136842 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| | Sbjct 1136843 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 1136902 Query 114635 TTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTCC 114691 | ||||| || | ||| | || | | || | | || | ||| || | |||||| Sbjct 1136903 TCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTTG-CCCTCC 1136959 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 | |||||||||| ||| || || || ||||| || || | || | ||| || || Sbjct 1136960 TTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 1137019 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 || | ||||| | || | ||| | || || ||||||||||||||||| || Sbjct 1137020 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGA 1137079 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 114871 || |||||||| || || ||| || || || || | || || | || || || Sbjct 1137080 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTC 1137139 Query 114872 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 114931 ||| | || | || || | || ||| | |||||| || || ||||| | || | Sbjct 1137140 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 1137199 Query 114932 G-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACG 114985 | || | ||| | | ||| |||||| ||||| | || ||| || || || Sbjct 1137200 GCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACA 1137256 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTAT 115043 |||||||| |||| | ||| | ||| || || || || ||| || ||| | | Sbjct 1137257 CGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCC--AG 1137314 Query 115044 TGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGC 115103 | || | || | || | || || ||||||||| || ||| ||| ||||| || | Sbjct 1137315 TAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCAC 1137374 Query 115104 ACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC 115163 | | ||||| | ||||||| || || || ||| |||| | | | | ||||| Sbjct 1137375 AGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGC 1137434 Query 115164 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 115223 | |||| ||| ||| || || || ||||||||||| || || | || || ||| Sbjct 1137435 AAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGA 1137494 Query 115224 ACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCCCGT 115280 | | | || ||||||| | ||| ||||||||||| || | || || || || Sbjct 1137495 AGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG-ATATCATCACCCC 1137551 Query 115281 GAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 115340 |||||| | || || ||||| | ||||| || || || | | |||| || | Sbjct 1137552 AAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAA 1137611 Query 115341 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | ||||||| |||||| ||||||| ||||| || Sbjct 1137612 TCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1137654 >seq990 Length=469732 Score = 188 bits (208), Expect = 9e-43 Identities = 542/820 (66%), Gaps = 29/820 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 112062 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 112003 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 125872 || || || ||||| | | || ||| | |||| |||| | ||| Sbjct 112002 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 111948 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| ||| Sbjct 111947 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 111888 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 ||| || || || || || |||| ||| |||||| ||||| || | ||| Sbjct 111887 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 111828 Query 125993 GCGTGAATGGTGTCCACCC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 | || || | | | | || | | ||| | || | || ||| || |||| Sbjct 111827 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 111771 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| |||||||| ||||| |||||||| || || |||||| ||| || ||| Sbjct 111770 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 111711 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 111710 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 111651 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCA 126228 || ||| ||||| |||| |||||||| ||||||||| | | | || | | | ||| Sbjct 111650 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 111592 Query 126229 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 || ||||| | ||||| || ||| || |||| ||||| || || | |||||| Sbjct 111591 TCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAG 111532 Query 126289 TTCCTTCTTTTCTGA--TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 126346 | || |||| || || |||||||| | || ||||| || || || ||| Sbjct 111531 GT--AGGTTCGCTGAGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCG 111474 Query 126347 CCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTG 126405 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| Sbjct 111473 GAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTG 111415 Query 126406 TACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 126464 ||||| | | ||| | | || ||||| ||||| ||||| ||| |||| | Sbjct 111414 GACCTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGA 111356 Query 126465 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 126521 | || || ||||| | | ||| ||| |||| | ||| || | ||||||| Sbjct 111355 AGAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGT 111296 Query 126522 CGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 | | |||||||| || ||||| | |||||| || ||||| Sbjct 111295 CATGGAGATCCTTGGAAAGATCAATCTCCTCAGCGGTCCA 111256 >seq1123 Length=1347922 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 171941 CCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACA 172000 |||| ||||| || ||||| ||||||||||| | | ||| | ||||| || Sbjct 224272 CCACTGGGTTCCAGACAGTTGATGTTGTTTGAACCGACGAAGTTCTGGGCCAGGCCGATG 224213 Query 172001 ATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCC 172060 || || | ||| || |||||||||||||||||| | || || | |||||| | Sbjct 224212 ATAGTCTGTTGGAGAGACTGTTCACCGTGATGGTAGGCAGTCTGCTCAGAGACATAACCA 224153 Query 172061 GCCAACTGTGCCACCTTCATCTCATCCTTG---AGGTTCTTGTGGAAGCACGCATACATG 172117 ||||| | | |||| ||| ||| ||| ||||| | | |||||| ||||| ||| Sbjct 224152 GCCAATTCAACGACCT---TCTTATCTTTGACCAGGTTTCTCTTGAAGCAGGCATATATG 224096 Query 172118 ACCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 172168 ||||| | ||| |||||||| ||| || || | || |||||| ||| Sbjct 224095 ACCTTACGCTGACCAGGCTTGAAGCCATCCAGCACGGACGGGATGGATCGC 224045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344064743160