Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1023 242 4e-59 >seq1023 Length=1138890 Score = 242 bits (268), Expect = 4e-59 Identities = 1061/1666 (64%), Gaps = 32/1666 (2%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| |||||| ||| ||||| || |||||||||||||| || || | | Sbjct 1137660 TACCAATACTTTGGCTTCAAGACTTTGGAGCGATCATACCTCCTCAAGATTGACGGTAAG 1137601 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||||| || || || || | ||||| || | | || ||| || | || Sbjct 1137600 ATTGTCGAGCGCCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGAT 1137541 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCAC 93896 || | || ||| | | | || ||| ||| | || |||| || | Sbjct 1137540 ATCGAGCGAGTCTTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATG-CCTC 1137482 Query 93897 CCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 || || || |||||||| || ||||| ||| || |||| || || ||| || | Sbjct 1137481 TCCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGA 1137422 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| |||| || ||||| | ||| | |||||| |||||| | ||||| Sbjct 1137421 TATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTC 1137362 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074 || || || || || || | | || ||| |||| ||||| | || |||||| Sbjct 1137361 CAAGATGGCTGGTGGTATTGGTCTGAACGTGCAC--CGTATCCGTGCTACTGGCTCCTAC 1137304 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 ||| ||||||||| || || || ||||| | || |||||||| || |||||||||||| Sbjct 1137303 ATCGCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAAC 1137244 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || ||||| || ||||||||||| | | | ||| |||| || |||| ||| Sbjct 1137243 ACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTC 1137184 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| |||||| | || || | ||| | || || || ||||||||||| || || Sbjct 1137183 GAGCCTTGGCACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAG 1137124 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | ||| | ||||| ||| ||| || ||| | || || ||||| ||||| || Sbjct 1137123 GAGGTCCGTGCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGT 1137064 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || || || ||| || ||||| || | || ||||| || || || || || ||||| Sbjct 1137063 GTTGAAAAGAACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGAC 1137004 Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGG 94434 | ||| | || || | |||| | ||||| | ||||||||| | Sbjct 1137003 TGCTACGGAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC 1136944 Query 94435 AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGT 94494 ||| ||| | ||| ||| || ||| | || | || | ||| ||||| || Sbjct 1136943 AAGACTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGA 1136884 Query 94495 ACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGG 94554 | || | ||| | | |||||| | |||| |||| |||||| || ||||||| Sbjct 1136883 AACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGT 1136824 Query 94555 GTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATT 94614 ||| ||||| || |||||||| || ||| | ||||| | | || |||||| | Sbjct 1136823 ACCATCCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTC 1136764 Query 94615 GCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCT 94674 ||||| || ||||| | ||| | ||| || ||||| | | | |||| | Sbjct 1136763 GCTGTCTGCAACCTTGCCTCTCTGGCTCTGCCCTCTTTCAT-CAA-----CTAC---GAT 1136713 Query 94675 ACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT--GAACC 94732 |||| | ||| | || || | || | | | ||| || | || |||| Sbjct 1136712 GAGGCTTGCTACGACTTCAAGAAGTTGCACAAGGT--CAGTCAGGTTGTTATTCGCAACC 1136655 Query 94733 TGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGA 94792 |||||| | | ||||| |||| |||||| |||| |||||| ||| ||| || Sbjct 1136654 TGAACAAGATCATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGC 1136595 Query 94793 AGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTC 94852 || || ||||| || | || || ||||| | || || || | | |||| Sbjct 1136594 GCCACCGACCCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTGCGCA 1136535 Query 94853 TGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATT 94912 |||||| ||| || ||| || | | || | | || ||||| | |||||| Sbjct 1136534 TGCCCTTCGAGTCACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACC 1136475 Query 94913 ACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGT 94972 ||| ||| | | ||||| || |||| | ||| | || || || | | Sbjct 1136474 ACGCTGCCCTCACTGCCTCCGTGCAGCTGGCTA---AGGAGGAGGGTCCCTACTCCACCT 1136418 Query 94973 TCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCT 95032 || || || ||| |||| || | ||||||||| | ||| || ||||||| Sbjct 1136417 TCAAAGGTTCCCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCT 1136358 Query 95033 CGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACG 95092 | | || | |||||||| |||| || | || || | | |||||| | ||| Sbjct 1136357 CTGACCTCTGGGACTGGGAGACTCTTCGAGAGGAAGTCAAGACACACGGCATCCGTAACA 1136298 Query 95093 CGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGT 95152 ||||| | || || ||||| |||||| || | ||||| || ||||||||||||| Sbjct 1136297 GTCTGCTCCTTGCTCCTATGCCTACGGCCAGTACCTCCCAGATTCTGGGCAACAACGAGT 1136238 Query 95153 CGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCG 95212 ||||| |||| |||||||||| | ||| | | || || ||||| || || |||| | Sbjct 1136237 GCTTCGAGCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGG 1136178 Query 95213 TCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAAGGTC 95271 | ||||| || || ||||| || || | ||||| ||||| || | Sbjct 1136177 TTGTCAACCCCTGGCTGCTCAAGGACCTTGTCGAC-ATGGGTCTGTGGTCCGATGCTATG 1136119 Query 95272 AAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGA 95327 ||||||| | |||| | || || ||| | |||||||| || | || || | Sbjct 1136118 AAGAACCGCATCATTGCT----GAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGC 1136063 Query 95328 GGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || ||||||| || || |||||||| ||||||||| | |||||| Sbjct 1136062 CGATGTCAAGGCTCTGTATAAGACCGTTTGGGAGATCTCTCAGCGC 1136017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494715302980920