Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq890 154 3e-32 seq335 134 3e-26 >seq890 Length=577872 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || ||||| ||||| |||||||| |||| ||||||||| ||| || Sbjct 198704 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 198763 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || |||||||| ||||||||||| || || ||| || Sbjct 198764 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCC 198823 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| |||| ||||| | | || || || | Sbjct 198824 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCAACCTCAAGG 198883 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| ||||||||||| || Sbjct 198884 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTG 198921 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| || ||||| || | ||||||||| | | ||| Sbjct 198932 CGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTT 198991 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || ||||||||||| ||||| || || ||| ||| || Sbjct 198992 CGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCC 199051 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | ||| || | || || || |||| Sbjct 199052 TCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGA 199111 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 199112 GTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 199149 Score = 100 bits (110), Expect = 7e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || ||||||||||||||||| | || ||| ||| |||||| ||||| Sbjct 198798 CTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAACATCCAG 198739 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| ||||||||||| ||| | ||||||| Sbjct 198738 AAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCG 198704 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || || ||||| || | ||||||||| || | || | || ||| Sbjct 199169 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 199228 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| || ||||| || |||||||| || ||| || || || ||| Sbjct 199229 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 199288 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| || |||| ||| || | | || || || | ||||| ||| Sbjct 199289 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 199348 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 199349 TTGCCAGTGAGGGTCTTGAC 199368 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| ||||| |||||||| || | |||||| |||| | ||| | || || Sbjct 199451 AGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 199510 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| || | || |||||||| || ||| || || ||| Sbjct 199511 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 199570 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||||| | | || || || | ||||| ||| Sbjct 199571 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 199630 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 199631 TTGCCGGTCAAGGTCTTGACGAAGATCTG 199659 >seq335 Length=1294100 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||| || || | |||||| Sbjct 506728 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 506669 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| ||||||||||| || || || || ||| Sbjct 506668 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 506609 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||||||| Sbjct 506608 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 506549 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || ||||| || Sbjct 506548 TTCCCCGTGAGGGTCTTGACGAAAATCTG 506520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178902311000559