Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1023 233 2e-56 seq990 150 2e-31 >seq1023 Length=1138890 Score = 233 bits (258), Expect = 2e-56 Identities = 1134/1782 (64%), Gaps = 39/1782 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || | | ||||| || || ||||| || || Sbjct 1137589 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 1137530 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||||||| || ||||||| | | |||| || || | || || ||||| Sbjct 1137529 CTTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTT 1137470 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || |||||| |||| ||| ||| | ||| | ||||| || Sbjct 1137469 CAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGA 1137410 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || |||| ||||||| |||||| ||||| ||| |||||| Sbjct 1137409 CAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 1137350 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908 |||||| || || || | || | || | || | | ||| || | | ||||| Sbjct 1137349 TGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACT--GGCTCCTACATCGCCGGTACC 1137292 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| ||| | ||| || |||| |||||||| || || ||| ||| || |||||| Sbjct 1137291 AACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 1137232 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||| | ||| ||| | | || || | || |||| || ||||| ||| Sbjct 1137231 GTCGACCAGGGTGGCAACAAGCGACCC---GGTGCTTTTGCCATCTACCTCGAGCCTTGG 1137175 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||| | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| || Sbjct 1137174 CACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGT 1137115 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| || || ||| ||| || ||||| || ||||| ||||||||| | ||||| || Sbjct 1137114 GCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAG 1137055 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | ||| | ||| | || | || || || || || || ||| |||| | || Sbjct 1137054 AACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGA 1136995 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGG 112260 |||||||| || || || ||| ||||||||| |||| | | | | | | || ||| Sbjct 1136994 GAGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTA 1136937 Query 112261 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | ||| | | ||| | || ||||| || | || || ||||| || | |||| Sbjct 1136936 TCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCAT 1136877 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| || ||||| |||| ||||| || |||||||| | ||| ||| Sbjct 1136876 TCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCC 1136817 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || |||||||| || || ||||| | || | | | || ||| ||||| | Sbjct 1136816 GAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCT 1136757 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT---- 112496 | ||||| || || | ||||| ||| | | | || || || | || || Sbjct 1136756 GCAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCTA 1136702 Query 112497 -GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 || | | || | ||| | || | | ||| | ||||| |||| | || Sbjct 1136701 CGACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCAT 1136642 Query 112556 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 ||| || ||||| || || ||||| || ||| ||| | ||||| || || Sbjct 1136641 CGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCAT 1136582 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATT 112674 |||||| ||||| || || || || |||| ||| || || || ||| | || || | Sbjct 1136581 TGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGAGT 1136523 Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734 | ||| || || |||| || || || ||||| || || ||||| || || Sbjct 1136522 CACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCA 1136463 Query 112735 AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 112794 || | || |||| ||| || ||||| || ||||| | ||||| || | Sbjct 1136462 CTGCCTCCGTGCAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCCG 1136403 Query 112795 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACT 112854 | || | || | || || || || |||||| | | || || | || |||| Sbjct 1136402 CCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGACT 1136343 Query 112855 GGGACGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 |||| ||| || || | | | ||||| | || | ||||||||||| | | || Sbjct 1136342 GGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCTCCTTGC 1136285 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || ||| ||| | || || |||| || || || ||||| || ||||| Sbjct 1136284 TCCTATGCCTACGGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTA 1136225 Query 112973 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 113032 ||| | |||||||| | || | ||||| || ||||| | |||||||| Sbjct 1136224 CACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCTG 1136165 Query 113033 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 113092 || | | ||||| || || ||||| |||||| | | ||||||| | | ||| | Sbjct 1136164 GCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCAT 1136105 Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152 | | |||||||||||| || ||| | || || | || | ||| |||| Sbjct 1136104 TGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGTA 1136045 Query 113153 CCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 113212 || |||||||| ||| | | ||| || | ||||| || ||||| ||| Sbjct 1136044 TAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGTGC 1135985 Query 113213 CTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAG 113270 ||||||||||| |||| ||| |||| | |||| || || |||||| |||| Sbjct 1135984 CTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAAG 1135927 Query 113271 CTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 113329 || | ||||||| | | || | |||||| || ||||| || || ||||| ||||| Sbjct 1135926 ATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACCT 1135868 Query 113330 CCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 113371 || | |||| || || |||||||||| | |||| Sbjct 1135867 TCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 1135826 >seq990 Length=469732 Score = 150 bits (166), Expect = 2e-31 Identities = 208/286 (73%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCA 102106 ||||| |||| || || ||||| ||| || ||| | | |||||| | ||||| | Sbjct 111490 CTCATTGACACCTACATCAAGGAGCCCGCTCAGC-GAACCTACCTCTTTAACGCCATTGA 111548 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGT 102165 || | || || || | |||||| || || ||||| || ||| | | | || | Sbjct 111549 GACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGA 111608 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | | | ||||||| |||| ||| | || || || ||||||||||||||||||| || Sbjct 111609 CTCCT-CCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTG 111667 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 || ||||| | |||| | |||||||||||||| ||||||||||| ||||| ||||| Sbjct 111668 GTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCT 111727 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||||| ||||||||||| ||||| || ||| || ||||| Sbjct 111728 CCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTTTGC 111773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732491399440