Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1023 206 3e-48 seq990 134 2e-26 seq352 87.8 2e-12 >seq1023 Length=1138890 Score = 206 bits (228), Expect = 3e-48 Identities = 1137/1783 (64%), Gaps = 57/1783 (3%) Strand=Plus/Plus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| || || |||| | || || |||||||| || ||| Sbjct 1135826 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 1135885 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669 ||||| || | ||||| || | || | |||||| | || |||| |||||| || Sbjct 1135886 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 1135944 Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727 || |||| | |||| ||| |||| | ||||||||| ||| || | || ||| Sbjct 1135945 TTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 1136002 Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 || | || ||| | | ||| ||||| || || || ||| ||||| ||| Sbjct 1136003 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCG 1136062 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844 | ||||| | | || || ||||| ||||| | | || ||| || | | |||| Sbjct 1136063 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 1136119 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 ||| | | |||||| ||||| || | || || |||| || |||||||| | Sbjct 1136120 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 1136179 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 ||||| || ||||| | || | |||||||| | |||||||| || ||||| Sbjct 1136180 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 1136239 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 1136240 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCCGTAGGCATAGGAGCAAGGAGCAGACTG 1136299 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 106079 ||||| | || | | ||||| ||||| ||| | |||||||| || | | Sbjct 1136300 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 1136356 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | || || || |||| |||| || || || || | || | || | ||| ||||| | Sbjct 1136357 GAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTT 1136414 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 106198 || || |||| ||| | | | ||||| | ||| | || |||| ||| Sbjct 1136415 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 1136473 Query 106199 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 106258 || || ||||| || ||||| | || | ||| || || ||| || || | Sbjct 1136474 TGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGC 1136533 Query 106259 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 ||| || | || || |||| || || || |||||||| | |||||| |||| ||| Sbjct 1136534 ATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTG 1136592 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 106377 ||||| ||| || || || || || || || || || |||| ||| Sbjct 1136593 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 1136652 Query 106378 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 106436 || || |||||| || ||| | || || || || | | || | || || Sbjct 1136653 CAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAG 1136708 Query 106437 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 ||| || | ||| | || || || | || || | ||||| ||||| || Sbjct 1136709 CCTCATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCT 1136768 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 | || | |||||| | |||||| || |||| |||||| || || || || | Sbjct 1136769 CGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGA 1136828 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || | Sbjct 1136829 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 1136888 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGG-TACAATGGCGTT 106671 |||| ||||| | || ||||| || | ||| | | | | | || | || | ||| Sbjct 1136889 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGA- 1136947 Query 106672 GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 106730 ||| | |||||| |||||||||| ||| || || || |||||||| || || Sbjct 1136948 --CCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGT 1137005 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCC 106790 ||| ||| || || || || || || | || | ||| | || || ||||| | Sbjct 1137006 CGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACAC 1137065 Query 106791 GCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCT 106847 ||||||||||||| || || ||||| ||| || |||| || || | ||| || ||| Sbjct 1137066 GCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGGCACGGA-CCT 1137122 Query 106848 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 | || | ||| ||||| || | ||||||||||| | || ||| | |||||| |||| Sbjct 1137123 CCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCT 1137182 Query 106908 CAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTG 106964 | || |||| || | || || ||| ||| | || | |||||||| || | Sbjct 1137183 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAG 1137242 Query 106965 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA 107023 || ||| || || |||||||| |||| || ||| | ||| ||| || || || ||| Sbjct 1137243 TGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGA 1137302 Query 107024 -ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTT 107082 || ||| | | || | | | || | || || |||||||| |||||| ||| Sbjct 1137303 TGTAGGAG--CCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTT 1137360 Query 107083 TGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTT 107142 ||||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 1137361 GGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCAT 1137420 Query 107143 GGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGG 107202 | | | ||||||| |||| || || || || || || |||||||| || || Sbjct 1137421 ATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGG 1137480 Query 107203 TGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCA 107260 | || || |||| | | || ||||||| || ||||||||||||||| || Sbjct 1137481 AGAGGCATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG 1137538 Query 107261 ATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || || || || | | ||||||||| | ||||| Sbjct 1137539 ATATCATCACCCCAAATACCAACAGACACACGCATGATCATGT 1137581 >seq990 Length=469732 Score = 134 bits (148), Expect = 2e-26 Identities = 336/504 (67%), Gaps = 20/504 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 112061 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 112002 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 117099 ||||| || || || | || || ||| | | || || | | || ||| Sbjct 112001 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 111948 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 |||||||| | || |||||||||||| ||| ||||||||||| |||| || Sbjct 111947 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 111888 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 ||| || || || || || |||| | | |||||| || || || | | ||| Sbjct 111887 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 111828 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | ||||| | | | ||| | | || | || | || ||| || |||| Sbjct 111827 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 111771 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| ||||||||||| || || || || || || |||||| || || ||| Sbjct 111770 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 111711 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||| Sbjct 111710 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 111651 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCA 117455 || ||| || || |||| || |||| ||| |||||| ||| | || | | | ||| Sbjct 111650 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 111592 Query 117456 TTTCATTGCCCATTTCGCCTTCTT 117479 | || ||||| | |||||||| Sbjct 111591 TCGGATGGCCCAGTCGGCCTTCTT 111568 >seq352 Length=998789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 140060 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 140119 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || ||| |||| || || | ||||| ||| | |||||||| ||| || Sbjct 140120 GTGTCATCGATGCCGATTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCACAACGAAT 140179 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 140180 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 140232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971382431480