Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq890 96.9 3e-14 seq47 93.3 3e-13 seq812 91.5 1e-12 seq236 91.5 1e-12 >seq890 Length=577872 Score = 96.9 bits (106), Expect = 3e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || |||||||||||| ||| || ||| ||||| || || || |||| Sbjct 199162 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCG 199221 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| ||||| ||||| ||||| || || | |||||||||||||| || || || Sbjct 199222 GCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTC 199281 Query 563376 TTTATCTTGAATTTTT 563391 ||||| ||||| ||| Sbjct 199282 CTTATCCTGAATCTTT 199297 >seq47 Length=1093343 Score = 93.3 bits (102), Expect = 3e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 390901 TTAACTAATTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATA 390960 ||||| ||| || ||||||||||| || || ||||| || | |||||||| ||| | | Sbjct 601033 TTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGCAGTATCAATGAGA 601092 Query 390961 CCTTCTCTTCCTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011 ||||||| || ||||| | |||||||||||||| ||||| |||| ||| Sbjct 601093 CCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAGACCA 601143 >seq812 Length=451497 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || || || || ||||||||||| || |||||||| | || Sbjct 51374 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCATC 51433 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || ||||| || || ||||| || ||||||||||| || |||| || || Sbjct 51434 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 51493 Query 550529 CTTGATAA 550536 ||||| || Sbjct 51494 CTTGACAA 51501 >seq236 Length=1281553 Score = 91.5 bits (100), Expect = 1e-12 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | ||||||||||| || ||||| ||||| ||| || || || ||||| ||| | Sbjct 1157346 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTTGAGATTCTC 1157405 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| ||||| |||||| ||| ||||| ||||| || | ||||| || ||| | | Sbjct 1157406 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAGGATGAGCGT 1157465 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176 || ||||| || || || || | || ||| | | ||| || || || || || Sbjct 1157466 TTGGTTGGAGACGCCGCCAAGAACCAGGCCGCCGCTAACCCCACGAACACCAT 1157518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029228466480730