Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1023 257 3e-63 seq990 181 2e-40 >seq1023 Length=1138890 Score = 257 bits (284), Expect = 3e-63 Identities = 810/1230 (66%), Gaps = 59/1230 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||||||||| |||||||| |||||| ||||||||| ||| | |||||||| Sbjct 1136462 GTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 1136520 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||| ||||| | | ||||| | ||||| || ||||| || || | | Sbjct 1136521 TGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGGCCCTGAACACCAAGA 1136578 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 1136579 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 1136636 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| ||||| || | | || | | |||| | || ||||| | Sbjct 1136637 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA 1136696 Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 | | | ||| ||| | ||| || || | |||| | || || | Sbjct 1136697 AGTCGTAG--CAA---GCCTCATCGTAGTTGATG---------AAAGAGGGCAGAGCCAG 1136742 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 ||| ||||| || || || |||||||| | |||| || || || || || Sbjct 1136743 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCA 1136802 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 |||||| || |||||| || |||| || || || |||||| ||| || || Sbjct 1136803 CAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 1136862 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| || || || ||||| ||| ||| | ||||| || ||| || Sbjct 1136863 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 1136922 Query 221890 TTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGG 221942 || |||| || | | ||| | |||| | | |||| |||||| ||| Sbjct 1136923 TT-TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTAC---- 1136977 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 ||||| | | |||| || ||||| ||| | ||||| || ||| | ||| | Sbjct 1136978 ---AGAGCCT--CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 1137032 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 ||||||| |||||| ||| | || || | || |||||| || || |||||||| | Sbjct 1137033 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 1137092 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | || | || || || | || || |||||| |||| ||| || | ||||| | Sbjct 1137093 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 1137152 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | |||| |||||| ||||| || |||| ||| | ||| |||||||||| Sbjct 1137153 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 1137212 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||||| || | ||| ||| | |||||||| ||||| | || || Sbjct 1137213 TGTTGCCACCCTGGTCGA-CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACA 1137271 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 | ||||| ||| ||||||||| || ||||| | || || | || ||| | Sbjct 1137272 ACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCAC---GGATACGG 1137328 Query 222302 -GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| || || |||||||| || || ||||||||||| ||| |||||||||| Sbjct 1137329 TGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 1137388 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| ||||| ||| ||| ||||| | | | || || ||||| |||| || Sbjct 1137389 TCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGG 1137448 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | || | |||||| || ||||||||| ||| ||||| ||| | || ||| Sbjct 1137449 GGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGAC 1137508 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT--CTGCATGGCGC 222536 ||||| | ||| ||||| | ||||| |||| | || || ||| | || | | | Sbjct 1137509 ATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACA-GACAC 1137567 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594 | | |||| ||||| ||| || | ||| ||| || | | || ||| ||||| Sbjct 1137568 A-CGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCT--TGAGGAGGTA 1137624 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||| |||| ||||||||| |||||||| Sbjct 1137625 TGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1137654 Score = 87.8 bits (96), Expect = 3e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | ||||| | ||| || ||| | || Sbjct 1136170 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 1136229 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | || ||||| || ||||| || || | Sbjct 1136230 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCCGTAGGCATAGGAGCAAG 1136289 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295 ||||||||||| || | ||| | | |||| || || || || | |||||| || Sbjct 1136290 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCA 1136349 Query 221296 G 221296 | Sbjct 1136350 G 1136350 >seq990 Length=469732 Score = 181 bits (200), Expect = 2e-40 Identities = 392/584 (67%), Gaps = 7/584 (1%) Strand=Plus/Plus Query 25463 TAACACACAAAGATATAT--GGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGC 25520 ||||| || | |||| || || | ||||||||||||||| | || ||||||||| Sbjct 111204 TAACAGACCATGATAGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGC 111263 Query 25521 CGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACG 25576 || ||||||||||| ||||||| | | | |||| || || || | || | Sbjct 111264 TGAGGAGATTGATCTTTCCAAGGATCTCCATGACTGGAACAACCGC-CTGACTGCCGATG 111322 Query 25577 AGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACG 25636 ||||| || || || | | || ||||| || || ||||||||||| || |||| Sbjct 111323 AGCAGTTCTTCGTCTCTCACATCCTTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACG 111382 Query 25637 AGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACG 25696 |||| || |||| |||||| | || || ||| | ||||| || ||||||| Sbjct 111383 AGAACCTCGTCGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACG 111442 Query 25697 GTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGT 25756 | |||||||| || || || | ||||| ||| || || ||| | || | Sbjct 111443 GCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCT 111502 Query 25757 ACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 |||| | || ||| || || || ||| ||||| ||| ||| ||| ||| Sbjct 111503 ACATCAAGGAGCCCGCTCAGCGAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCA 111562 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || | |||||| |||||||| |||||| | || | | | |||| | Sbjct 111563 TCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCC 111622 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || || || |||||||| ||||| ||||| ||||| ||| | || || | | Sbjct 111623 AGCGTCTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTA 111682 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || ||||||||| ||| ||| ||||||||||||||| Sbjct 111683 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCT 111742 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | || |||||||| |||| || ||||||||||| ||| || Sbjct 111743 CTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCAC 111786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928829973314880