Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233935.1_202017-07-27] 1,277 sequences; 50,403,639 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq335 89.7 4e-13 >seq335 Length=1294100 Score = 89.7 bits (98), Expect = 4e-13 Identities = 271/413 (66%), Gaps = 27/413 (7%) Strand=Plus/Minus Query 19348 GGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGT 19407 ||||| | ||||||||||| || || ||| |||||| | ||||| || || | | Sbjct 629428 GGACTACTACTTTATGGGCCCCCAGGAACTGGTAAAACACTGATTGCCCGACAATTAGGC 629369 Query 19408 AAATTACTTACAAAAC----AACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAA 19463 ||| ||| | |||| | || || || ||||| ||||| || ||| | | ||||| Sbjct 629368 AAA--ACT--CTAAACGCCCATCCACCTAAGATTGTCAATGGCCCCGAAGTGCTGAATAA 629313 Query 19464 ATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGA--A 19521 | ||| |||||||| || || || | || |||| || || || || |||| | Sbjct 629312 GTTTGTTGGTCAATCCGAGGAGAACATCAGAAAGCTGTTCGCAGATGCAGAGAAAGAGTA 629253 Query 19522 CAA--AAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGAC 19578 ||| ||| |||| | | | ||| | | ||||| || || | ||||| | || Sbjct 629252 CAAGGAAA-----AGGGAGACGAGAGTGGTCTTCACATCATCATCTTTGATGAGCTTGAT 629198 Query 19579 GCAATCTGTAAGCAAAGAGGTTCTGGTGTAAATGGAGT-ACA--------TGACACTGTT 19629 || | |||||||| |||||||||| ||| | ||| ||| |||||| Sbjct 629197 GCTGTTTGTAAGCAGCGAGGTTCTGGATCTGGTGGCGGCACAGGTGTTGGTGATACTGTT 629138 Query 19630 GTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATT 19689 ||||| || ||||| | ||| | || || || || |||| || ||||| | | || Sbjct 629137 GTCAACCAGCTCCTTGCCAAACTCGATGGCGTGGACAAACTTAACAATATCCTTTTGATC 629078 Query 19690 GGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCG 19742 |||||||| ||| || ||| | || ||| || || |||||||||| || Sbjct 629077 GGCATGACCAATCGAAAGGATATGATCGACGAGGCTTTGCTACGACCCGGACG 629025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449814218385