Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233955.1_202017-07-27] 11,382 sequences; 59,420,771 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq220 113 1e-19 >seq220 Length=1138922 Score = 113 bits (124), Expect = 1e-19 Identities = 615/963 (64%), Gaps = 34/963 (4%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| || |||| ||| | | ||||| | ||| | | ||||| ||||| || Sbjct 1167 TGGACTCTGCCATTGTCTATGACCGCGATTTCCAATACCAATACTTTGGCTTCAAGACTT 1226 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 ||||| ||| || |||||||| ||||| || ||||| || || || |||||||||| Sbjct 1227 TGGAGCGATCATACCTCCTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCAGCACATGA 1286 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACA 248962 | ||||| ||| |||| || ||| ||||| || ||| | || | ||||| |||| Sbjct 1287 TCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTCTTGGAGACATACA 1346 Query 248963 CCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 | ||| || || || | ||||||||| | || ||||||||||||||||| | Sbjct 1347 ACCTGATGTCCAGCAAATTCT---TCACACATGCCTCTCCCACGCTCTTCAACGCCGGCA 1403 Query 249020 -CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 || ||| | || || || ||||| | ||| ||| | |||||| | | || Sbjct 1404 CCCCTCAGC-CCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGACAGTATTGAG 1462 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || || || || | |||| || | ||| || || | || || || || Sbjct 1463 GGAATCTACGATACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATT 1519 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 ||||| ||| | ||||| || | || || |||||| ||||| || || | Sbjct 1520 GGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATCGCCGGTACCAA-CGGTAC 1578 Query 249196 AGTG-ATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCA 249254 | | | ||| | || || | ||||| ||| | ||| || | | || |||| Sbjct 1579 ATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATGTCGACCA 1638 Query 249255 GGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATAT 249311 || || | ||| || | || ||||| || | || |||||| | ||| | Sbjct 1639 GGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGT 1698 Query 249312 ATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCT 249371 || |||||||| || | |||||| |||| || ||| | | || |||||||| Sbjct 1699 CTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGACCT 1758 Query 249372 CTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTG 249431 ||| || ||| ||| || | || | |||||| || || | ||||||| || Sbjct 1759 TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGCGACTG 1818 Query 249432 GACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTAC-ACGGCGCCGACTTCG 249490 |||||| | | || ||| ||| | |||| ||| || | |||| | || |||| Sbjct 1819 GACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGA-CTGCTACGGAGAGGAGTTCG 1877 Query 249491 ACCAAGC-CTATAAGAAA--TACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC 249544 | || || || |||| ||||| | |||| | ||||||| |||||||||| Sbjct 1878 ---AGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTATCAAGGCTC 1934 Query 249545 GGACCCTTT-TTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TT 249602 || |||| | || | | ||| |||||| ||||| || || | | || | Sbjct 1935 AGAAACTTTGGTACG-CCATTCTTGAGGCCCAGACTGAGACCGGAAACCCAT-TCATGCT 1992 Query 249603 GTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTC 249662 | ||| || || |||||| |||||| |||||| | | || ||||||||||| || Sbjct 1993 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTC 2052 Query 249663 AAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCT 249722 || || || | || | ||| | |||| || || ||| | || ||||||||||| Sbjct 2053 CAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTGCAACCT 2112 Query 249723 GGC 249725 || Sbjct 2113 TGC 2115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073609810632576