Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233955.1_202017-07-27]
11,382 sequences; 59,420,771 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq220 179 5e-40
>seq220
Length=1138922
Score = 179 bits (198), Expect = 5e-40
Identities = 573/881 (65%), Gaps = 12/881 (1%)
Strand=Plus/Minus
Query 65816 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 65875
|||||| || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 2044 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 1985
Query 65876 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 65934
||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| |
Sbjct 1984 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 1926
Query 65935 TTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCGAACTCGT 65991
| || ||| | ||| | ||| ||||| | |||| |||||||| |
Sbjct 1925 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 1869
Query 65992 CTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 66051
|||| | | | | | ||||| || || | || ||||||| || ||| || ||||
Sbjct 1868 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGT 1809
Query 66052 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGG 66111
| | || || ||||| || |||||||| |||||||| || | || | || | ||
Sbjct 1808 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 1749
Query 66112 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAAT 66171
| ||||| || || ||||| ||||| |||||| | | | |||| | |
Sbjct 1748 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 1689
Query 66172 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 66231
|||| || || | ||| ||||| | | | || || || ||||| || ||||| || | |
Sbjct 1688 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 1629
Query 66232 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 66291
| | ||| ||||| || | || | | ||| |||| || ||| || |||||||| ||||
Sbjct 1628 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 1569
Query 66292 TCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATAGACCTATTCCCCC 66349
| |||| ||| ||| ||| | ||||| ||| | | || | |||| || || ||
Sbjct 1568 TACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACC 1511
Query 66350 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 66409
||||| || ||||| | || || || | ||||| ||||| ||||| ||||| ||
Sbjct 1510 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 1451
Query 66410 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 66469
||| |||| | || | || || |||| |||| | || || || || || ||
Sbjct 1450 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 1391
Query 66470 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 66529
| || ||||| || || || || |||| || | || ||||| ||||| | |
Sbjct 1390 GAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 1331
Query 66530 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 66589
| || ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 1330 TCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCG 1271
Query 66590 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649
|| || ||||| || || || | | ||| ||| |||||||| || || |||||
Sbjct 1270 CTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAA 1211
Query 66650 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690
|| | |||| || || || || || | ||| | ||||
Sbjct 1210 GTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658079158464880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |