Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233955.1_202017-07-27] 11,382 sequences; 59,420,771 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq91 372 6e-98 seq220 327 2e-84 seq9373 93.3 8e-14 >seq91 Length=469747 Score = 372 bits (412), Expect = 6e-98 Identities = 600/849 (71%), Gaps = 24/849 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| ||||||||| ||||||||||| || ||||||| Sbjct 358531 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCTGAGGAGATTGATCTTTCCAAGGAT 358472 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 | |||| | || ||| ||| | || |||| ||| || |||| | Sbjct 358471 CTCCATGACTGGAA--CAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCTCACATCC 358414 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| || ||||| || || ||||| |||||||| | | | |||| Sbjct 358413 TTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTG 358354 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || |||||||||||||||||||| || |||||| Sbjct 358353 GCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 358294 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGC 42600 | ||||| ||| ||| || ||||||| |||| |||||| ||| |||| ||| Sbjct 358293 TCCACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCCCGCTCAGC 358237 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | | | || || || ||||| ||||| || ||||||||| |||||||| ||||||| Sbjct 358236 GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGG 358177 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | || |||||| || | ||| | | || | | || | || || || || | | Sbjct 358176 CCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTG 358117 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-G 42779 | || ||||| ||||||||| || ||||||||||| ||||||||||||||| || | Sbjct 358116 CTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTG 358057 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || |||||||| || |||||||| ||||| |||||| | || ||||| || || Sbjct 358056 GTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCAC 357998 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCG 42898 | ||||||||||||||||| ||| |||||| ||| | ||| | ||| || Sbjct 357997 ACTGACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC-AAGCAGAT 357942 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 | ||| || ||||| || || ||||| || ||| ||||||||||||| || | || Sbjct 357941 GATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCT 357882 Query 42959 GCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 ||| ||| |||| ||||||||||| ||||||||| ||||||| ||| ||||| Sbjct 357881 TCCCTGTG-CCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCG 357823 Query 43018 CCGACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 | || | ||||| ||| | ||| || | | ||||| | | ||||||| Sbjct 357822 CTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAG-GTTTACAAGGCCACCAACCCCTTC 357764 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 ||||| |||||||||||||| | | |||||||||||||| ||||||||||| || ||| Sbjct 357763 GACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCC 357704 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 357703 GACTACCAG 357695 >seq220 Length=1138922 Score = 327 bits (362), Expect = 2e-84 Identities = 896/1358 (66%), Gaps = 41/1358 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || || ||||||| |||| | || || Sbjct 2692 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 2633 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || || || ||||| || | | Sbjct 2632 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCCGTAGGCATAGGAGCAAG 2573 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 2572 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 2522 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||| ||||| || | |||| Sbjct 2521 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAG 2463 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | ||||| || | | |||| | ||||||||| || || ||||||| || | Sbjct 2462 AGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGG 2403 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||| ||||||||||||||| |||||| | || || |||| | Sbjct 2402 CAGT-GAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCG 2344 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| |||| || | ||| | ||||| || ||||| || || | Sbjct 2343 GGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGA 2284 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| |||| | || | || | || || ||||| ||| | Sbjct 2283 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCAC 2225 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 ||||| | |||||| |||||||| | | || | ||| ||| | | || | || | Sbjct 2224 ATCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAACTTCTTGA 2166 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | | |||| || | |||| || | || || | Sbjct 2165 AGTCGTA------GCAAGCCTCATCGTAGTTGATG------AAAGAGGGCAGAGCCAGAG 2118 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| ||||||||||| || ||||| || | | ||||| | ||| || ||||| | Sbjct 2117 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACA 2058 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 |||| || |||||| || |||| || || ||| |||| ||||||||| |||| Sbjct 2057 GGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 1998 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || |||||||| |||||| | || | | || ||| || | Sbjct 1997 TGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTT 1938 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| ||| ||||| |||||||||| |||||| |||||| |||| Sbjct 1937 TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCT 1878 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| || || ||| | ||||| |||||| |||||||| || ||| Sbjct 1877 CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCC 1818 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||||| | | || | || |||||| || || |||||||| ||||| |||| | Sbjct 1817 AGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAA 1758 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | ||| || || |||||| | || || | || || |||| Sbjct 1757 GGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGA 1698 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || |||||| ||||| | ||||| || | || ||||| ||||||||||| |||| Sbjct 1697 CATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCT 1638 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | ||||| |||||||| || || |||| || | ||||| Sbjct 1637 GGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTC 1582 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279 || |||||||| || |||||||| ||| | | | | | | ||| | | || Sbjct 1581 GATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGC--ACGTTCA 1524 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || ||||||||| | ||| ||| |||||| || || || | Sbjct 1523 GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTC 1464 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| || ||||| |||||| | | || ||||| || |||| ||||||| ||| Sbjct 1463 CCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGG 1404 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| | |||||| || ||||| ||| || || ||| Sbjct 1403 TGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAG 1366 >seq9373 Length=1499 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||||||||| |||||||| ||||| ||||| |||||||||| | |||| Sbjct 1108 CTGGCCTTCTTCGCTGCCTCTGATGGCATTGTCAACGAGAACCTGGTTGAGCGCTTCAGC 1167 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| ||| ||||| |||||||||||||| ||||| || || |||||| Sbjct 1168 GCTGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGATTCCAAATTATGATGGAGAAC 1227 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||| || || || |||| |||||| ||| | | |||| Sbjct 1228 ATTCACTCAGAGACCTACTCCCTCCTCATCGACACATACATCACGGAACAGGCTCAGCGC 1287 Query 42603 AACGGGCTGTTCAAGGCCATGGAGAC 42628 | |||||||| || || ||||| Sbjct 1288 GAGTATCTGTTCAATGCTATTGAGAC 1313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944204844140320