Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233955.1_202017-07-27] 11,382 sequences; 59,420,771 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 seq36 89.7 3e-13 >seq9 Length=577821 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| ||||| ||||| | |||| | || |||| |||| ||| || || || || Sbjct 198752 TCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCATCTTCCAACTGCTTACCAGCGAA 198810 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||||||||| |||||| || ||| Sbjct 198811 GATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 198870 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || |||||| || | ||| ||||| ||||| |||||||||||||| Sbjct 198871 GTCGATAGTGTCACTGGACTCAACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCAC 198930 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 198931 AAAAATCTGCATA 198943 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || ||| ||||||||||| ||||| ||||| |||| |||| || Sbjct 198961 AACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTC 199020 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || || || || ||||| || || || | || | ||||||||||| Sbjct 199021 AAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTG 199080 Query 34892 AATCTT-CTGTT----TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| || || | | ||| ||||| | | ||| || || | || ||| Sbjct 199081 GATCTTGCTCTTCACATTATCAATGGTATCGGAT-----GACTCGACTTCCAGAGTAATG 199135 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| ||||| || ||||| |||||| Sbjct 199136 GTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATA 199171 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || || | || | || || ||||| || ||||| || Sbjct 199490 TCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 199549 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | ||||||||||| |||||| ||||| || Sbjct 199550 ATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT 199607 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | |||||| |||| ||| ||||| || || || | ||||| Sbjct 199608 --TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTT 199665 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 199666 GACGAAGATCTGCAT 199680 >seq36 Length=946076 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| ||| | ||| |||| || Sbjct 439300 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 439359 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || ||||| |||||||| | || | ||||||||||| Sbjct 439360 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 439419 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 439420 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 439479 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| ||||| || || |||||||| || Sbjct 439480 CCCGTGAGGGTCTTGACGAAAATCTGCATCTT 439511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324588567435696