Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233955.1_202017-07-27] 11,382 sequences; 59,420,771 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq220 208 9e-49 seq91 134 2e-26 seq136 87.8 2e-12 >seq220 Length=1138922 Score = 208 bits (230), Expect = 9e-49 Identities = 1139/1783 (64%), Gaps = 55/1783 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || | | || || || || || || || || Sbjct 1273 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 1332 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 75328 ||||||||||||| || ||||||| || | | |||| || || | || || ||| Sbjct 1333 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCCTCTCCCACGCTC 1390 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||||| || || || || || || |||| ||||||| | | | | ||||| Sbjct 1391 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1450 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 1451 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1510 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 75506 || |||||||| || || | || | | | || | | ||| || ||| || | Sbjct 1511 GGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGG--CTCCTACATCGCCGGTA 1568 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 | || ||| ||| | ||| || |||| |||||||| || || ||| ||| || |||| Sbjct 1569 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCT 1628 Query 75567 ATGTAAATCAAGCGGGGCGTC--GCAAGG-GGTCCATC-GCGGTCTACTTGGAACCATGG 75622 |||| | || | | ||| | || | ||| | | || ||||| | || || ||| Sbjct 1629 ATGTCGACCAGG-GTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGG 1687 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || | ||| || | ||||||||||| | || ||||| ||| | || |||| || | Sbjct 1688 CACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGG-TCCG 1746 Query 75683 TGTA-GAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | || || |||| || ||| ||||| || || |||||||||||||| ||||| Sbjct 1747 TGCCCGTGACCT--TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAA 1804 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || || | ||| | || | || || || || || || ||| ||||| Sbjct 1805 AAGAACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTAC 1864 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCG 75856 || |||||||| || || || ||| |||||| || ||||||| | | ||| | Sbjct 1865 GGAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAA---G 1921 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 ||| | | || | | || ||||| | || ||||| | | ||||| ||||| |||| Sbjct 1922 ACTAT-CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAA 1980 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 |||| ||||| ||||||||||| || ||| ||||| ||||||||||| | || || Sbjct 1981 CCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTAC 2040 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||| ||||| || || ||||| |||||| | |||||| | || ||| || Sbjct 2041 CATCCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGC 2100 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT---GAAGAGACTCGCAC 76092 ||| ||||| | || || | || || || | |||| || ||| || || Sbjct 2101 TGTCTGCAACCTTGCCTCTCTGGCTCTGCCCTCTTTCATCAACTACGATGAGGCTTGC-- 2158 Query 76093 TTTTGATTATGAAAAACTT-CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAG 76151 | || | | || || || || | ||| || |||||| || || ||| Sbjct 2159 -TACGACT-TCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGA 2216 Query 76152 TCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 |||| || || || || || || || || || ||| ||||| ||| ||| Sbjct 2217 TCATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGAC 2276 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTT 76270 | |||||| | |||||||| || || || |||| || || | ||| | | | || Sbjct 2277 CCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTGCGCATGCCC-TTC 2335 Query 76271 GATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCC 76330 || ||| || || ||| | || | ||||| || ||||| || ||||| || Sbjct 2336 GAGTCACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCC 2395 Query 76331 CTGGAGGCGAGTTGTGAAT-TGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 || || ||| | ||||| | | | ||| |||| || || | ||||| Sbjct 2396 CTCACTGCCTCC-GTGCAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTC 2454 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTA 76449 ||||| || | || | || ||||| || |||||| || || || || || | || Sbjct 2455 CCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGG-AACGTCAAGCCCT-CTGACCTC 2512 Query 76450 CG--ACTGGGA---TGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | ||||||| | ||| ||||| ||||| | || | ||||||||||| Sbjct 2513 TGGGACTGGGAGACTCTTCGAGAGGAAG---TCAAGACACACGGCATCCGTAACAGTCTG 2569 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 | | || || ||||| || ||| ||| | || || |||| || || || ||||| Sbjct 2570 CTCCTTGCTCCTATGCCTACGGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTC 2629 Query 76565 GAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTC 76624 || || ||||| | |||||||||| || | ||||| |||||||| ||||| Sbjct 2630 GAGCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTC 2689 Query 76625 AACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 76684 ||| || |||| ||||| | || ||||| |||||| | | ||||||| | Sbjct 2690 AACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAAC 2749 Query 76685 CTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAG 76744 | ||| | | | |||||||||||| || || | | ||||| | ||| ||||| Sbjct 2750 CGCATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAG 2809 Query 76745 AATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGAT 76804 ||| || || || ||||| ||| | | ||| || | ||||| || ||| Sbjct 2810 GCTCTGTATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGAT 2869 Query 76805 CGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGA 76862 || ||| ||||||||||| |||| ||| |||| | |||| || || |||| Sbjct 2870 CGAGGTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACGA 2927 Query 76863 TGTCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATG 76921 || |||| || | |||||| | || | || ||||| | || ||||| || || ||| Sbjct 2928 TGGGCAAGATCACCAGTATGCACTTTGCAGGC-TGGAAGCTTGGCCTCAAGACTGGCATG 2986 Query 76922 TACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||||| || || || |||| || || |||||||||| Sbjct 2987 TACTACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCA 3029 >seq91 Length=469747 Score = 134 bits (148), Expect = 2e-26 Identities = 336/504 (67%), Gaps = 20/504 (4%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || |||| | | | || | ||| |||||| ||| |||| Sbjct 358192 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTC-CTCCTTTGCCCAGCG 358134 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || ||| ||||||||||||||| || | ||| | |||| | Sbjct 358133 TCTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTT 358074 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || |||||| || || || || || || Sbjct 358073 CTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 358014 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA---TAG 65258 ||||||||||| ||| || |||||| || ||| || | || | || | | Sbjct 358013 TGATGAGGGTCTTCACACTGACTTTGCC-TG--CCTCCTCCACTCTCACCTCAAGGGTCG 357957 Query 65259 ACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 ||| | | | ||||| | ||| | | || || || |||||| | | ||| Sbjct 357956 TGCCAGCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTT 357897 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 | || || || || || ||| || |||| ||||||||||| ||| |||| Sbjct 357896 CCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTA 357837 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTG-GGGTGCCACCCA-----TTTG 65432 |||||||| || | ||||||||||| || | | || || | | ||| Sbjct 357836 CATTGAGTTCGTCGCTGATCGTCTCCT------TGTCGCGCTTGGCAACGAGAAGGTTTA 357783 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 || || | || || || ||||| ||||| ||||| ||||| ||| ||||||||||| Sbjct 357782 CAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTT 357723 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| |||| ||||| Sbjct 357722 CTTCGAGAAGCGTGTTGCCGACTA 357699 >seq136 Length=997520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27858 GCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCC 27917 |||||| || |||||||| || ||||| || || | ||| ||||||||||| || Sbjct 138966 GCGCTCCAGAACAAGTTGAGCAATGCGGTCGCCCTCCTTCACCTCAAAGTCGGATTCGTT 138907 Query 27918 GTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACC 27977 ||| |||||||| | ||| ||||| | || || |||| ||| || ||||| || || Sbjct 138906 GTGGTTGAAGAGCAGGACCTTGACCTGGCCGCGGTAATCGGCATCGATGACACCAGCGCC 138847 Query 27978 AACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCAT 28030 | ||| |||||| ||||||||| ||||| || |||| || |||| Sbjct 138846 TGTGTCAATGAAATGCTTGGAAGCGAGACCCGATCGAGGGGCAATGCGTCCAT 138794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596484723060160