Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27] 1,275 sequences; 50,410,650 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq666 190 3e-43 seq124 107 3e-18 >seq666 Length=1138835 Score = 190 bits (210), Expect = 3e-43 Identities = 594/907 (65%), Gaps = 22/907 (2%) Strand=Plus/Minus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 |||||||||||||| || || | |||||| || | || | ||| || ||||| Sbjct 2073 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 2014 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 ||| || |||||||| || || || || || | || || ||| |||| | || | | Sbjct 2013 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 1954 Query 71869 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTC 71924 || || | ||| | | || |||||| | ||| ||||| | ||| || | || Sbjct 1953 ATGGCGTACCA-AAGTTTCTGAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCTC 1898 Query 71925 GTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACA 71981 ||| || ||| | | | |||||||| ||| || |||| | | | | ||||| || Sbjct 1897 GTACTTTTCGTACAGAGCC--TCGAACTCCTCT-CCGTAGCAGTCGGCGAGGCCAGGGCA 1841 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039 || || || ||||||| | ||| || || | || ||| || || ||||| || ||| Sbjct 1840 CTCGTTGGGGCACATCAGCGTCCAGTCGCCGT--TCTTTTCAACACGCTTCATGAAAAGA 1783 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| |||||||| || | || || || | || | |||||| || || ||| Sbjct 1782 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTC 1723 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | | Sbjct 1722 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 1663 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || ||||| || | || | ||| ||||| || | || | Sbjct 1662 GCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGA 1603 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| || ||| || |||| ||| ||||| |||| ||| ||| ||| | ||| Sbjct 1602 AGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCA 1543 Query 72280 CGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || ||| ||| || ||||| || || || ||||| || ||||| | || || Sbjct 1542 CGGATACGGTGCACGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGG 1485 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 || | ||||| ||||| ||||| ||||| || ||| |||| | || | || || Sbjct 1484 TCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAG 1425 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 |||| |||| | || || || || || || | || ||||| || || || || Sbjct 1424 ATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGA 1365 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 |||| |||| || ||||| ||||| | || || ||||| || | Sbjct 1364 ATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATAC 1305 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | || | |||||||| | ||| |||||||| | || || ||||| | || || | Sbjct 1304 CAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGA 1245 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 | ||| ||| |||||||| || || ||||| || | |||| || || || || | Sbjct 1244 GGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCAT 1185 Query 72638 AAATAAT 72644 | | ||| Sbjct 1184 AGACAAT 1178 >seq124 Length=480479 Score = 107 bits (118), Expect = 3e-18 Identities = 548/863 (63%), Gaps = 22/863 (3%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || | ||||| || ||||| || || ||||| || | | || || || Sbjct 357693 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 357752 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA-AAT 41892 |||||||| || || || ||||| | || |||| || | | |||| || || Sbjct 357753 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGT-TGCCAAGCGCGACAAG 357811 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 | | ||| |||| ||| || || || ||||| | ||| | ||||| || | ||| Sbjct 357812 GAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAG 357871 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | ||||||||| |||| || || || || ||||| | ||| || || || || || Sbjct 357872 GGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGAT 357931 Query 42013 AGATCTTACTGTTTCTTCA-CTCGGTGGAT--ACAATAAATGTTTAAAC--ATCAAACAT 42067 | | ||| || || || | ||| || | | || | | | || Sbjct 357932 A-----TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGGCAG 357986 Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || || || ||| ||||||||||| | | || | |||||||| || || || ||| Sbjct 357987 GCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCG 358046 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| || |||||||| || ||||| || ||||| || || | ||| |||||||| Sbjct 358047 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATA 358106 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATC 42244 || || || || || || |||| || | || || | || | | || || ||| Sbjct 358107 CCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATC 358166 Query 42245 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 || | || ||||| |||||||||||| | || || || || || ||||| ||||| Sbjct 358167 CATCGGATG-GCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAA 358225 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 ||| ||| || | | || || | || || || || | || || | || Sbjct 358226 GAGGTAGGTTCGCTGAGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 358285 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| || || ||||| || |||||||| || | ||||||| | ||| Sbjct 358286 GGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTG 358345 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || || ||||| || | | || ||||| || || || ||| || || || Sbjct 358346 GACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAA 358405 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATC 42540 || || | | || | || | | || || | || | || ||||| || Sbjct 358406 GAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTC 358465 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 || || ||| || || | ||| | || || | ||||| || || || || ||||| || Sbjct 358466 ATGGAGATCCTTGGAAAGATCAATCTCCTCAGCGGTCCAGAAGGAAGCCTCAGCCTTCTT 358525 Query 42601 ATACATATTCCAGA--TATCATG 42621 ||||| | ||| | ||||||| Sbjct 358526 GTACATTTGCCAAATCTATCATG 358548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128503719000