Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27] 1,275 sequences; 50,410,650 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq124 147 2e-30 >seq124 Length=480479 Score = 147 bits (162), Expect = 2e-30 Identities = 370/559 (66%), Gaps = 5/559 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| || || | ||| || || || || || | ||| ||| ||| || | Sbjct 357983 GCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 358042 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || || || || |||| || || Sbjct 358043 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAA 358102 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || || || || || || || | ||| | |||||| | | ||| | || Sbjct 358103 GATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTA-TCCT 358161 Query 93271 -GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||||| | ||||| ||||| || || || || || | || || || |||| Sbjct 358162 GGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGT 358221 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 |||| ||||| ||||| | | || ||||| || || || | ||| || || Sbjct 358222 TAAAGAGGTAGGTTCGCTGAGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGG 358281 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || || |||| |||||||| || ||||| |||||||| || | ||| || | || Sbjct 358282 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGA 358341 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| || || | |||| ||| ||||| || || ||||| |||||||| || || | Sbjct 358342 TCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAG 358401 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCC 93566 | || ||||| | || || | || | |||||| | | | | || | || Sbjct 358402 CGAAGAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCC 358461 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | || ||||| || |||||||| | || || | ||||| || || || || || | Sbjct 358462 AGTCATGGAGATCCTTGGAAAGATCAATCTCCTCAGCGGTCCAGAAGGAAGCCTCAGCCT 358521 Query 93627 TTTTGTACATATCCCATAT 93645 | |||||||| | ||| || Sbjct 358522 TCTTGTACATTTGCCAAAT 358540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851925031000