Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27] 1,275 sequences; 50,410,650 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq124 140 7e-28 seq666 109 1e-18 seq366 109 1e-18 seq611 105 1e-17 >seq124 Length=480479 Score = 140 bits (154), Expect = 7e-28 Identities = 386/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 357717 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 357776 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 357777 GCCTTGTAAACCTTCTCGTTGCCAAGCGCGACAAGGAGACGATCAGCGACGAACTCAATG 357836 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 357837 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 357896 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 357897 AACTCCTGCTCAATGGTGACGGCATCAGTAATGATATCCTGGATCATCTGCTTGCTGGCA 357956 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 357957 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 358009 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| |||| Sbjct 358010 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 358069 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | |||| ||| ||| | | |||||| ||| | | ||||| Sbjct 358070 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAAAGCAAC 358129 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 358130 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 358189 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | |||||| || || || || | |||||| || | |||| || || Sbjct 358190 CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCGCTGAGCGGGCTC 358249 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| || || ||||| |||| || |||||| Sbjct 358250 CTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 358295 >seq666 Length=1138835 Score = 109 bits (120), Expect = 1e-18 Identities = 448/697 (64%), Gaps = 11/697 (2%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | |||||||| ||||||||||| | | || ||| | ||| Sbjct 2896 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGA 2837 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| ||||| |||| ||||||||||| | | | ||| || ||||| Sbjct 2836 GATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTG 2777 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 2776 AATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG-T 2718 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | || || || || | | ||||||||| ||||||||||||||||| || | Sbjct 2717 CGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTC 2658 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||| ||||| || ||| ||| ||| ||| || |||||| | | Sbjct 2657 GTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGG 2598 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACAC 293470 || || ||||||||| ||||| |||| ||| | | || | ||||||| Sbjct 2597 TACTGGCCGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTT 2538 Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATA 293528 | | ||| | |||||| |||||| ||| || || | || ||| | | | Sbjct 2537 CCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCGAA 2480 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 ||| | |||||||| ||| || || || | ||||||| | ||| || | ||| | Sbjct 2479 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 2420 Query 293589 AGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647 || |||| ||| || || | ||||| ||||||| ||||||||||| || Sbjct 2419 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 2361 Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707 |||||| ||||||| || || || ||||| ||| | ||| |||| | Sbjct 2360 TGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAA 2301 Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAA 293767 | ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| | | Sbjct 2300 GGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGA 2241 Query 293768 CCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | | || ||||||| ||| || ||| |||||| Sbjct 2240 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 2204 >seq366 Length=684011 Score = 109 bits (120), Expect = 1e-18 Identities = 177/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| ||||| | Sbjct 345940 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACCTTCTCTC 345999 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| |||||||| || ||| || | |||| |||||||||| | | Sbjct 346000 TTGCCTACGGTGCCAAGATTCTTCTCAACCAGACTCACCTCCGTCTCAAGCGTGGTCAGC 346059 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| ||||||||| || | || ||| |||||| ||||||||||| | Sbjct 346060 GTTACGGTCTTTGCGGTCCCAACGGTTCCGGAAAGTCCACTCTCATGCGCGCCATCAACA 346119 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | || || || ||||| ||| ||||| | ||| || | || |||||| Sbjct 346120 ACGAGCAGGTTGAGGGTTTCCCTAA-GCAGAGCGAGGTCAAGACCGTCTTCGTCGAGCAC 346178 Query 279555 GACATCGACTCC 279566 ||| | |||||| Sbjct 346179 GACCTTGACTCC 346190 Score = 102 bits (112), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| ||||| || ||||| ||||| || |||||||| || ||| Sbjct 346776 TCTCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 346835 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || || || ||||| ||| | ||||| |||| | | |||| ||||| Sbjct 346836 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 346895 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| | |||||||||||| |||||||| ||||| || |||| |||| Sbjct 346896 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACT 346955 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 346956 CCTTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 347014 >seq611 Length=1368104 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639 |||| |||||||| ||||||| ||||||||| || | | |||| |||||| | || Sbjct 1123664 CGTGCTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAA 1123605 Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699 |||||| |||| | ||||||| | | || |||||||||| || || ||| ||| Sbjct 1123604 CCTGGTCAAAGATAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCTGAGCAGACTGCCTA 1123545 Query 218700 CCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759 |||||||||||| ||| ||| || | || | ||| |||| ||| ||| || || Sbjct 1123544 CCATCACGGTGAACAGTCTCTCCAACAGACTATCATCGGCCTGGCCCAGAACTTCGTCGG 1123485 Query 218760 CAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 |||||||| |||| ||| |||| || | || |||||||| || Sbjct 1123484 TTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 1123434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820009322275