Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27] 1,275 sequences; 50,410,650 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq644 107 2e-18 seq332 95.1 1e-14 seq744 84.2 2e-11 >seq644 Length=856019 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || || || | | Sbjct 506798 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCA 506739 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 506738 AAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 506679 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 506678 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 506619 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 506618 ACGAAAATCTGCAT 506605 >seq332 Length=577874 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||||||| || || || || | || ||||| | Sbjct 379075 TTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAG 379016 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| || || || || ||||| || ||||| ||| | || | || Sbjct 379015 CGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTC-CTGAATCTTGCTCTTC 378957 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||| | ||||| ||||| | || | || || || || ||||| Sbjct 378956 ACGTTG-TCGATAGTGTCACTGGACTCAACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 378898 Query 138597 TTTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 378897 CTTCACAAAAATCTGCAT 378880 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | || | || | ||| | | | || ||||| ||||||||||||||| Sbjct 378650 CCGCCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 378591 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| |||||||| || || | | |||| || ||||| || || ||||| Sbjct 378590 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGG 378531 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | |||| ||| |||| || | ||| |||| |||||| | Sbjct 378530 ATACCCTCCTTATC-CTGAATCTTTGACTTAACATTG-TCGATGGTATCGGACGACTCGA 378473 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 |||| | || | || || ||||| || || || || Sbjct 378472 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 378436 >seq744 Length=960972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| | ||| || |||||||| || ||||| | ||| Sbjct 545995 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 545936 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || |||||||||||||| || || || || ||||| ||| || || | |||| Sbjct 545935 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 545877 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| | ||||| ||||||| || | || || || ||||| || || || Sbjct 545876 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 545817 Query 138604 AAA 138606 ||| Sbjct 545816 AAA 545814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254490818000