Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27]
1,275 sequences; 50,410,650 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq332 154 3e-32
seq644 134 3e-26
>seq332
Length=577874
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || || ||||| ||||| |||||||| |||| ||||||||| ||| ||
Sbjct 379100 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 379041
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| |||||| || |||||||| ||||||||||| || || ||| ||
Sbjct 379040 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCC 378981
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| |||| ||||| | | || || || |
Sbjct 378980 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCAACCTCAAGG 378921
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || |||||||| ||||||||||| ||
Sbjct 378920 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTG 378883
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | ||||||||| || ||||| || | ||||||||| | | |||
Sbjct 378872 CGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTT 378813
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || ||||| || ||||||||||| ||||| || || ||| ||| ||
Sbjct 378812 CGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCC 378753
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| |||||| || | ||| || | || || || ||||
Sbjct 378752 TCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGA 378693
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || ||||| || || || || |||||
Sbjct 378692 GTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 378655
Score = 100 bits (110), Expect = 7e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
||||||||||| || ||||||||||||||||| | || ||| ||| |||||| |||||
Sbjct 379006 CTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAACATCCAG 379065
Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
|| ||||| ||||||||||| ||| | |||||||
Sbjct 379066 AAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCG 379100
Score = 95.1 bits (104), Expect = 3e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || || || || ||||| || | ||||||||| || | || | || |||
Sbjct 378635 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 378576
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || |||||||| || ||||| || |||||||| || ||| || || || |||
Sbjct 378575 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 378516
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
||||||||| ||| || |||| ||| || | | || || || | ||||| |||
Sbjct 378515 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 378456
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || ||||| || || ||
Sbjct 378455 TTGCCAGTGAGGGTCTTGAC 378436
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| |||||||| ||||| |||||||| || | |||||| |||| | ||| | || ||
Sbjct 378353 AGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 378294
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| |||||||| || | || |||||||| || ||| || || |||
Sbjct 378293 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 378234
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || |||| ||||| | | || || || | ||||| |||
Sbjct 378233 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 378174
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || || || || ||
Sbjct 378173 TTGCCGGTCAAGGTCTTGACGAAGATCTG 378145
>seq644
Length=856019
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| || |||||||| |||| ||||||||| || || | ||||||
Sbjct 506816 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 506757
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || |||||||| ||||||||||| || || || || |||
Sbjct 506756 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 506697
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || || | |||||||||
Sbjct 506696 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 506637
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || || ||||| ||
Sbjct 506636 TTCCCCGTGAGGGTCTTGACGAAAATCTG 506608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178902341210425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |