Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27] 1,275 sequences; 50,410,650 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq332 159 1e-33 seq1099 145 2e-29 seq644 105 2e-17 >seq332 Length=577874 Score = 159 bits (176), Expect = 1e-33 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || |||||||| || || ||||| || || || Sbjct 378882 CATACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTC 378823 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| |||||||| || ||||| ||||| || || || ||||| || Sbjct 378822 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGG 378763 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| | Sbjct 378762 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 378704 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 378703 CGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 378652 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| |||||||||||||| || ||||| || | Sbjct 378376 TTTGCATACCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGT 378317 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || || || || || | |||||||| | Sbjct 378316 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 378257 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| || || || |||||||| || | || ||||| || || | || || | Sbjct 378256 CAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAG 378197 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| | || || || || |||||||| Sbjct 378196 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 378142 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || |||||||| ||||| || || ||||| || | Sbjct 378658 TTTGCATACCGCCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGT 378599 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || ||||| ||||| |||||||||||||| || || ||||||| Sbjct 378598 AGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGAT 378539 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || ||||||||||| || | || ||||| || || | ||| || | Sbjct 378538 CAGGAGGGATACCCTCCTTATCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACG 378479 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || ||||| || | ||||| || || || || || || Sbjct 378478 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 378436 Score = 143 bits (158), Expect = 8e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| || | || ||||| || |||||||| ||||| || || || || || || Sbjct 379106 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 379047 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || |||||||| | || || ||||| ||||| ||||| ||||||||||| ||| Sbjct 379046 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 378987 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || |||||||| || ||| || || || || || | ||| | ||||| Sbjct 378986 ATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTCAAC 378928 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||||||||| || || || |||||||||||||| Sbjct 378927 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 378880 >seq1099 Length=730555 Score = 145 bits (160), Expect = 2e-29 Identities = 440/672 (65%), Gaps = 17/672 (3%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 400479 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 400420 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || |||| || || || | || || Sbjct 400419 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCCCAGAACACT 400360 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 400359 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATCCTGAGG--TC----CAG 400306 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | || | || || || || || | | || | | ||| |||| ||| || | || Sbjct 400305 GCCGACATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCAACATC 400249 Query 349496 GAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||||||| | || || || || || || || ||||| || || || | ||| | Sbjct 400248 GAGGTTGAGTTCAAGGGCGAGACCAAGACC-TTCACCCCCGAGGAGATCTCCGCCATGAT 400190 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | || || | || | || || || || | | ||||| Sbjct 400189 CCTCACCAAGATGCGTGAGACCGCCGAGTCTTACCTCGGCGAGACTGTCAACAACGCTGT 400130 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | ||||||| || ||||| || || ||| | |||||| || || || |||||||| Sbjct 400129 TGTTACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCT 400070 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | || ||||| |||| || || || || |||||||| || ||||| || Sbjct 400069 CATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTA 400010 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || ||||| || | | || || || | || || || ||| | |||||||| Sbjct 400009 CGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGG 399950 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || || || || || | || || Sbjct 399949 TACCTTCGATGTTTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGC 399890 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||||| || || | ||||| || || || || || ||||| || || || || || Sbjct 399889 CGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAA 399830 Query 349915 AGAATTTAAGCG 349926 ||||| ||||| Sbjct 399829 CGAATTCAAGCG 399818 Score = 120 bits (132), Expect = 9e-22 Identities = 193/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || |||| | |||||| |||||||| |||| ||| || ||||| Sbjct 679477 ATCTTCCAGAGCCTTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGC 679418 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| ||||| ||||||| || Sbjct 679417 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAG 679358 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | || || | || | || || | ||| | || || Sbjct 679357 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 679298 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 | ||||||||||| |||| || || ||| | ||||| || || || || ||| | || Sbjct 679297 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 679238 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| |||||||| |||||| Sbjct 679237 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 679205 Score = 113 bits (124), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 |||||||||||| | ||||| ||| || || | |||||||| || ||||| || || Sbjct 680238 CGTGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAGGTGTTC 680182 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 680181 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 680122 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 680121 CCAGGGTTGACAA 680109 >seq644 Length=856019 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 506835 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 506776 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| ||||| Sbjct 506775 GCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGG 506716 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 506715 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 506656 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 506655 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 506605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515229646898825