Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27] 1,275 sequences; 50,410,650 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq744 143 6e-29 seq332 143 6e-29 seq644 140 8e-28 seq666 113 1e-19 seq146 107 5e-18 >seq744 Length=960972 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||||| ||||| || |||||||| ||||||||||| Sbjct 545993 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 545934 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 545933 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 545874 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 545873 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 545815 >seq332 Length=577874 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| ||||| || || | ||||| |||| | ||| Sbjct 378873 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 378814 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || ||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 378813 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 378754 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| || ||||| || || | || || || | Sbjct 378753 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 378694 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || || | ||| | |||||| Sbjct 378693 AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 378652 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || ||||| ||||| || || || |||| ||||| ||| ||| || Sbjct 379100 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 379041 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | |||||| |||||||||||||| || || || || || |||||||| Sbjct 379040 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCC 378981 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||| ||||| ||||| || || || || | Sbjct 378980 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCAACCTCAAGG 378921 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||| || Sbjct 378920 GTGATGGTCTTTCCGGTGAGAGTCTT 378895 >seq644 Length=856019 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| ||| || || | ||||| Sbjct 506816 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 506757 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| ||||| || ||||| || || || || |||||||| Sbjct 506756 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 506697 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||||||| Sbjct 506696 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 506637 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || || | ||| | ||||| || Sbjct 506636 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 506602 >seq666 Length=1138835 Score = 113 bits (124), Expect = 1e-19 Identities = 188/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 || |||||| |||| || | ||| || ||||||| ||||| || | || ||| Sbjct 2028 TTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCA 1969 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || | |||||| | |||||||| ||||| || | ||| | | |||| Sbjct 1968 GTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTG 1909 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || ||| ||||||||||||||||||| |||| || || | ||||||| ||| |||| Sbjct 1908 CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 1849 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || ||||| | || |||| || || | |||| || | ||||||| Sbjct 1848 CCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATG 1789 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 || || |||| |||||| |||| |||||| Sbjct 1788 AAAAGATCAGGGATCCAAAGGGCGAGGAAAAG 1757 >seq146 Length=47610 Score = 107 bits (118), Expect = 5e-18 Identities = 197/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || || ||||||||||| | | || ||||| ||||| |||||| ||||| || | Sbjct 39357 ACATTGTATTTAATATTCGCTCTTTTCTCTGG-ATTATTAGGTACAGCTTTTTCAGTGTT 39415 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 || || | ||| |||| || || || |||| ||| | | ||||| ||| | | Sbjct 39416 AATTAGACTTGAACTTAG-TGGGCCAGGAGTTCAA-TAT--ATTTCTAATAATCAATTAT 39471 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | ||| | | ||||| || || || | | ||||| ||||| | |||||||| | Sbjct 39472 ATAACAGTGTAATTACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCCGCAT 39531 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || || ||||||| || | ||||||||| | |||| ||| |||||||| | Sbjct 39532 TAATAGGTGGGTTTGGAAATTTTTTAATGCCTTTAATGGTAGGTGGTCCGGATATGGCAT 39591 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | || ||||||||||| |||||| |||| ||| Sbjct 39592 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCTCCT 39632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192511718884850