Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233985.1_202017-07-27] 1,275 sequences; 50,410,650 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq644 129 4e-25 seq332 122 6e-23 seq744 100 2e-16 >seq644 Length=856019 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| ||| || ||| | || || Sbjct 506813 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 506754 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || ||||| ||| Sbjct 506753 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 506694 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || |||||||| Sbjct 506693 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 506634 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| ||||| || ||||| Sbjct 506633 CCCGTGAGGGTCTTGACGAAAATCTGCAT 506605 >seq332 Length=577874 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| || ||||||||||| | ||| ||| |||| || Sbjct 378350 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCA 378291 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || ||||| || ||||| || | || | || ||||| ||| Sbjct 378290 AGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 378231 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||||| || || ||||| | || || |||| Sbjct 378230 ATCTTGGACTTGACATTGT--CGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 378173 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || | |||||| |||||||| ||||||||| Sbjct 378172 TGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 378138 Score = 118 bits (130), Expect = 8e-22 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 |||| ||| || || ||||| || |||||||| |||| ||||| | || | || | Sbjct 378860 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCG-GC-CATCCT 378803 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || || ||||| | ||||| ||||| | ||| | ||| ||||| ||| Sbjct 378802 CAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCT 378743 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| |||| || || || |||| ||||| |||| Sbjct 378742 GGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCT 378683 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||||||| |||||||||||||| Sbjct 378682 TTCCAGTGAGGGTCTTGACGAAGATTTGCAT 378652 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || |||||||| || |||||| ||||||||||| ||| | || || || | || || Sbjct 379088 ACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG-CGACCATCTTC 379030 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 379029 CAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTG 378970 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||| ||| || ||||| | || || ||||| Sbjct 378969 AATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCAACCTCAAGGGTGATGGTCTT 378910 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| |||||||| || || ||||| Sbjct 378909 TCCGGTGAGAGTCTTCACAAAAATCTGCAT 378880 Score = 109 bits (120), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||| || |||||||| ||||| || || |||| || Sbjct 378632 ACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCG 378573 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||| ||||||||||| | ||| | ||| ||||| ||| Sbjct 378572 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGA 378513 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| || || ||||| | || || |||| Sbjct 378512 ATCTTTGACTTAACATTGT--CGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCT 378455 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || ||||||||||| |||| Sbjct 378454 TGCCAGTGAGGGTCTTGACGA 378434 >seq744 Length=960972 Score = 100 bits (110), Expect = 2e-16 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| || || |||| Sbjct 545995 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 545936 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||| || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 545935 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 545876 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 545875 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 545818 Query 44326 GAA 44328 ||| Sbjct 545817 GAA 545815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984806086675