Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq438 104 3e-17 seq368 96.9 4e-15 seq471 84.2 3e-11 >seq438 Length=150773 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || | || || |||||||| ||||| || Sbjct 38304 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 38363 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 38364 GATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 38422 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 38423 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 38482 Query 43171 CAAAGATTTGCATTTT 43186 | || || ||||| || Sbjct 38483 CGAAAATCTGCATCTT 38498 >seq368 Length=1727344 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||||| || | || || ||||||||||||||||| | Sbjct 1127703 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 1127644 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | |||||||| ||||| | || | || |||||||||| ||| || |||| | Sbjct 1127643 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1127584 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 1127583 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 1127524 Query 43174 A 43174 | Sbjct 1127523 A 1127523 >seq471 Length=1798895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || | || || | ||||||||||||||| Sbjct 90969 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAA 91028 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | | |||||||||| ||| | || | | ||| Sbjct 91029 GATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC-TGAATCTTGCTCTTCACGT 91087 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || || || | |||||||| || || || || ||||| | Sbjct 91088 TGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCA 91147 Query 43171 CAAAGATTTGCAT 43183 |||| || ||||| Sbjct 91148 CAAAAATCTGCAT 91160 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || | ||||| || | || || || ||||| |||||||| Sbjct 91198 TCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAG 91257 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||||||||| || |||| || | | |||||||||| ||| || || | | Sbjct 91258 ATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTA 91317 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || ||| || || || || | || ||||| || || || || ||||| || Sbjct 91318 TCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACG 91377 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 91378 AAGATCTGCAT 91388 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || || || || || |||| || || ||||| ||||| || Sbjct 91426 TCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAG 91485 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | | |||||| ||| ||| | |||| | | | | Sbjct 91486 ATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCC-TGAATCTTTGACTTAACATT 91544 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||| ||| || || || | |||||||| ||||| || || ||||| || Sbjct 91545 GTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 91604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814111912640