Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq445 242 5e-59 seq473 145 1e-29 >seq445 Length=2036916 Score = 242 bits (268), Expect = 5e-59 Identities = 571/847 (67%), Gaps = 29/847 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| | ||||| Sbjct 110864 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 110923 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AGTTTATA-- 125135 |||||||| || | || ||| | | || |||||| | || |||| |||| | Sbjct 110924 TCCAAGGATCTCCATGACTGGAACAACCGCCTGACTG---CCGA-CGAGCAGTTCTTCGT 110979 Query 125136 -TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||||| | || ||||| || | || ||||| || |||||||| || || || || Sbjct 110980 CTCTCACATCCTTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGA 111039 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATC 125252 |||||| | ||| | || || |||| |||| |||| ||||| ||||| ||| Sbjct 111040 G-CGATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCAGATC 111097 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||| |||||| | ||||| || | ||||| || ||||||| ||||| || Sbjct 111098 ATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAG 111157 Query 125313 CC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 || || | ||| | ||||||||||| || || || | || | || || || || Sbjct 111158 CCCGCCCAGCGAACCTAC-CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAA 111216 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| || || |||||| | || | | || || | ||| | | || || Sbjct 111217 GGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGT 111276 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || ||||| || || ||||| |||||||| ||| || || | ||||| ||||| Sbjct 111277 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 111336 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||||||||| || ||||||||||| ||||| | |||||| | || ||||| || || Sbjct 111337 CAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGA 111396 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAG 125611 ||| || ||| |||||||||| || || | ||| | | | | || | | Sbjct 111397 GGGTCTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGTCG 111447 Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671 ||||| | | | | || | || | || |||||||| | || || || ||||| Sbjct 111448 TGCCAGCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTT 111507 Query 125672 TCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731 || || || | || || | | | | |||||||||| | || ||| |||| Sbjct 111508 CCTCACTGAGGCTCTTCCCTGCGCCCTTCTCGGCATGAACTCTGATCTCATGAAGCAGTA 111567 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAA 125788 ||| ||||| || || |||||||| || || | ||||| || ||| ||||||| Sbjct 111568 CATTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CGCTTGGCAACGAGAAGGTTTACAA 111624 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 |||| || ||||| || |||||| | ||| || || | || ||||||||||| || Sbjct 111625 GGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTT 111684 Query 125849 CGAGAAG 125855 ||||||| Sbjct 111685 CGAGAAG 111691 >seq473 Length=938315 Score = 145 bits (160), Expect = 1e-29 Identities = 303/446 (68%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 790005 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 790064 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | ||| Sbjct 790065 GTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGAC 790124 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || ||| | || ||| | ||||||||||| || | | ||| || Sbjct 790125 CTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGCGAC 790184 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || || || |||| |||| || || ||||| Sbjct 790185 TGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAGTTC 790244 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| | |||||| | || |||| | || | || | Sbjct 790245 GAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGCTCA 790303 Query 97175 AGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| ||| | |||| || ||| ||| ||| ||||| |||| || | ||| |||| Sbjct 790304 GAAACTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATGCTCT 790362 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| || || ||||| ||||||||| || | || |||||| |||||| Sbjct 790363 ACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTCCA 790422 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | |||||||| |||||| | |||||| Sbjct 790423 ACCTGTGCACTGAAATTATTGAGTAC 790448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054679538880