Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq473 174 2e-38 >seq473 Length=938315 Score = 174 bits (192), Expect = 2e-38 Identities = 572/882 (65%), Gaps = 14/882 (2%) Strand=Plus/Minus Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||| || || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 790412 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 790353 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63090 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 790352 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 790294 Query 63091 TTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATACAATCGTTCGAACTCG 63146 | || ||| | |||| | || ||||| | |||| |||||||| Sbjct 790293 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCC 790238 Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206 ||||| | | | | | ||||| || || | || ||||||| || ||| || ||| Sbjct 790237 TCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCG 790178 Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63266 | | | || || ||||| || |||||||| |||||||| || | || || || | | Sbjct 790177 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGG 790118 Query 63267 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63326 | | ||||| || || ||||| ||||| |||||| | | | |||||| Sbjct 790117 GCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAG 790058 Query 63327 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63386 ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | Sbjct 790057 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 789998 Query 63387 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63446 || | ||| ||||| || | || | | ||| |||| || |||||| ||| |||| ||| Sbjct 789997 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTG 789938 Query 63447 GTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCC 63504 ||||||| ||| ||| ||| | ||||| ||| | | || | |||| || || | Sbjct 789937 GTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCAC 789880 Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTAT 63564 | ||||| || ||||| | || || || | || || ||||| ||||| || || | Sbjct 789879 CAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGT 789820 Query 63565 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63624 | || |||| | || | || || |||| |||| | || || || || || | Sbjct 789819 CGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGA 789760 Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684 | | || ||||| || || || || |||| || | || ||||| ||||| | Sbjct 789759 AGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGA 789700 Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744 || || ||||| ||| || || | |||||||| | |||||||||||| | Sbjct 789699 CTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGC 789640 Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804 || || ||||| || || || | | ||| ||| |||||||| || || |||| Sbjct 789639 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 789580 Query 63805 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 | || | |||| || || || || || | ||| | |||| Sbjct 789579 AGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 789538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943400022080