Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq445 369 7e-97 seq473 327 2e-84 >seq445 Length=2036916 Score = 369 bits (408), Expect = 7e-97 Identities = 597/848 (70%), Gaps = 22/848 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 110873 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTTTCCAAGGAT 110932 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 | |||| | || ||| ||| |||| |||| ||| || |||| | Sbjct 110933 CTCCATGACTGGAA--CAACCGCCTGACTGCCGACGAGCAGTTCTTCGTCTCTCACATCC 110990 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| || ||||| || || ||||| |||||||| | | | |||| Sbjct 110991 TTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTG 111050 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || |||||||||||||||||||| || |||||| Sbjct 111051 GCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 111110 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGC 42600 | ||||| ||| ||| || ||||||| |||| |||||| ||| |||| | ||| Sbjct 111111 TCCACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGC 111167 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | | | || || || ||||| ||||| || ||||||||| |||||||| ||||||| Sbjct 111168 GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGG 111227 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | || |||||| || | ||| | | || | | || | || || || || | | Sbjct 111228 CCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTG 111287 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779 | || ||||| ||||||||| || ||||||||||| ||||||||||||||| || | Sbjct 111288 CTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTG 111347 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || |||||||| || |||||||| ||||| |||||| | || ||||| || || Sbjct 111348 GTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCAC 111406 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCG 42898 | ||||||||||||||||| ||| |||||| ||| | ||| | ||| || Sbjct 111407 ACTGACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC-AAGCAGAT 111462 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 | ||| || ||||| || || ||||| || ||| ||||||||||||| || | || Sbjct 111463 GATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCT 111522 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||| |||| ||||||||||| || |||||| ||||||| ||| |||||| Sbjct 111523 TCCCTGCGCCCTTCTCGGCATGAACTCTGATCTCATGAAGCAGTACATTGAGTTCGTCGC 111582 Query 43019 CGACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 || | ||||| ||| | ||| || | | ||||| | | |||||||| Sbjct 111583 TGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAG-GTTTACAAGGCCACCAACCCCTTCG 111641 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 |||| |||||||||||||| | | |||||||||||||| ||||||||||| || |||| Sbjct 111642 ACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCG 111701 Query 43138 ACTACCAG 43145 |||||||| Sbjct 111702 ACTACCAG 111709 >seq473 Length=938315 Score = 327 bits (362), Expect = 2e-84 Identities = 896/1358 (66%), Gaps = 41/1358 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || || ||||||| |||| | || || Sbjct 791060 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 791001 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 791000 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 790941 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 790940 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 790890 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||| ||||| || | |||| Sbjct 790889 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAG 790831 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | ||||| || | | |||| | ||||||||| || || ||||||| || | Sbjct 790830 AGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGG 790771 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||| ||||||||||||||| |||||| | || || |||| | Sbjct 790770 CAGT-GAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCG 790712 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| |||| || | ||| | ||||| || ||||| || || | Sbjct 790711 GGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGA 790652 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| |||| | || | || | || || ||||| ||| | Sbjct 790651 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCAC 790593 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 ||||| | |||||| ||||| || | | || | ||| ||| | | || | || | Sbjct 790592 ATCGATGATCTTGTTCAGGTTACGAATAA-CAACCTGACTGACCTTGTGCAACTTCTTGA 790534 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | | |||| || | |||| || | || || | Sbjct 790533 AGTCGTA------GCAAGCCTCATCGTAGTTGATG------AAAGAGGGCAGAGCCAGAG 790486 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| ||||||||||| || ||||| || | | ||||| | ||| || ||||| | Sbjct 790485 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACA 790426 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 |||| || |||||| || |||| || || ||| |||| ||||||||| |||| Sbjct 790425 GGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 790366 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || |||||||| |||||| | || | | || ||| || | Sbjct 790365 TGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTT 790306 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| ||| ||||| |||||||||| |||||| |||||| |||| Sbjct 790305 TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCT 790246 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| || || ||| | ||||| |||||| |||||||| || ||| Sbjct 790245 CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCC 790186 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||||| | | || | || |||||| || || |||||||| ||||| |||| | Sbjct 790185 AGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAA 790126 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | ||| || || |||||| | || || | || || |||| Sbjct 790125 GGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGA 790066 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || |||||| ||||| | ||||| || | || ||||| ||||||||||| |||| Sbjct 790065 CATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCT 790006 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | ||||| |||||||| || || |||| || | ||||| Sbjct 790005 GGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTC 789950 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279 || |||||||| || |||||||| ||| | | | | | | ||| | | || Sbjct 789949 GATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGC--ACGTTCA 789892 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || ||||||||| | ||| ||| |||||| || || || | Sbjct 789891 GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTC 789832 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| || ||||| |||||| | | || ||||| || |||| ||||||| ||| Sbjct 789831 CCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGG 789772 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| | |||||| || ||||| ||| || || ||| Sbjct 789771 TGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAG 789734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333439530880