Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq471 120 3e-22 seq438 120 3e-22 seq368 100 3e-16 seq445 95.1 1e-14 >seq471 Length=1798895 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||| | || | || | || ||||| || || || ||||| |||| | Sbjct 90934 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 90993 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || |||||| |||| | ||||||||||| || || Sbjct 90994 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 91053 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||| | |||| |||| ||||| | |||||| Sbjct 91054 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTG-TCGATAGTGTCACTGGACTCGAC 91112 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| ||||| || |||||||||||||| Sbjct 91113 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 91160 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| |||||||| | ||||| || || ||||| || || Sbjct 91702 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 91761 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| || ||||| || || || ||||||||||||||| || || |||| Sbjct 91762 GCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 91821 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | ||| || |||| ||| | || |||||||||| || Sbjct 91822 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 91881 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 91882 TTGACGAAGATCTGCATG 91899 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| || || ||||| ||||| ||| Sbjct 91162 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 91221 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || |||||| |||| | |||||| ||||||||||| Sbjct 91222 AGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 91281 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | || | ||| || | ||||||| Sbjct 91282 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 91341 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || || || || || |||||||| Sbjct 91342 TCCAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 91388 >seq438 Length=150773 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 38299 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCA 38358 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 38359 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 38418 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 38419 ACGTTG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 38477 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 38478 CTTGACGAAAATCTGCAT 38495 >seq368 Length=1727344 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||| || || || || ||||||||||| Sbjct 1127669 ATCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTT 1127610 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 1127609 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 1127550 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 1127549 GGTCTTGCCCGTCAGGGTCTTCACGAAA 1127522 >seq445 Length=2036916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 240/362 (66%), Gaps = 15/362 (4%) Strand=Plus/Plus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||| || || || ||||||||| ||||| | || || || || ||||| || Sbjct 111353 ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGAC 111412 Query 47283 TTTGCCTGTCTCTACTAC----AACACTAGAGTCGATCAA--AAGTTGGACGTGCCCACC 47336 |||||||| ||| | || | | | || |||| | | ||| | || | Sbjct 111413 TTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGA---TGATC--- 111466 Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 ||| || || || | || |||||| |||||||| |||||| || | |||||||| Sbjct 111467 --CAG-GATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTT 111523 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 ||| | | | || |||||| | || | |||| ||||||| || || ||||| Sbjct 111524 CCCTGCGCCCTTCTCGGCATGAACTCTGATCTCATGAAGCAGTACATTGAGTTCGTCGCT 111583 Query 47457 GACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAG 47516 || || || || || ||| | ||| ||||| | || || || ||||| Sbjct 111584 GATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGAC 111643 Query 47517 TTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAA 47576 || ||| | ||||| || || | |||||||||||||| ||||||||||| || | ||| Sbjct 111644 TTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 111703 Query 47577 TA 47578 || Sbjct 111704 TA 111705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497899445120