Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq445 192 7e-44 seq473 150 2e-31 >seq445 Length=2036916 Score = 192 bits (212), Expect = 7e-44 Identities = 538/817 (66%), Gaps = 23/817 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 111706 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 111647 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || ||| | |||| |||| | ||| Sbjct 111646 GAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-----CCAAGCGCGACAAGG 111592 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||||| ||| ||||||||||| |||| ||| Sbjct 111591 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGATCAGAGTTCATGCCGAGAAGG 111532 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || || || || || |||| ||| ||||||| || || || | ||| Sbjct 111531 GCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 111472 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 111471 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 111415 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||| ||||| |||||||| || || |||||| |||||| ||| Sbjct 111414 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 111355 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 111354 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 111295 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || ||| ||||| |||| ||||||| |||||||||| | ||| | | ||| Sbjct 111294 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 111235 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 || ||||| | ||||| || ||| || |||| ||||| || || | |||||| Sbjct 111234 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGG 111175 Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 127822 | | | | || || |||||||| | || ||||| || || || ||| | Sbjct 111174 TAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAG 111115 Query 127823 TGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 |||| | | ||| || | ||| | ||||||| | || || ||| ||||| || Sbjct 111114 TGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGAC 111056 Query 127882 CTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940 ||| | | ||| | | || ||||| ||||| ||||| ||| |||| || | Sbjct 111055 CTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAAGA 110997 Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 127997 | || ||||| | | ||| ||| || | | ||| || | |||||||| | Sbjct 110996 AAGCAAGGATGTGAGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGTCAT 110937 Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||||| || ||||| | |||||| |||||||| Sbjct 110936 GGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 110900 >seq473 Length=938315 Score = 150 bits (166), Expect = 2e-31 Identities = 1162/1848 (63%), Gaps = 55/1848 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 791397 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 791338 Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 | |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 791337 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 791279 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 791278 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 791219 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || | | ||| ||||| || || | || || ||| | ||| | ||||| Sbjct 791218 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 791159 Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 | || || || || || ||| | || ||| || | | ||||||| | | Sbjct 791158 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 791102 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| ||||| || | || |||| | | ||| | |||||||| || Sbjct 791101 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAA 791046 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 |||||| ||||| |||| | |||||||||| ||||| ||||| |||||||| || Sbjct 791045 CTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 790986 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| |||| || |||| || ||| || ||||| || || | ||| || ||||| || Sbjct 790985 GTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACG 790926 Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || || | | | | | | || || | | |||||||| || | | | Sbjct 790925 GATGCCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGC 790868 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| || |||||||||||||| | || || || || || | || || Sbjct 790867 TTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTG 790808 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| |||| | ||||| || |||||| ||||| || Sbjct 790807 GAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAA 790751 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 || ||||| || || | || | | |||||| || || || | | || Sbjct 790750 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG- 790692 Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || |||| || || || || ||||| || ||||| || || || | ||| Sbjct 790691 CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCAT 790632 Query 116292 ATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 116351 ||| || ||||| || || || || ||| |||||| | | | || || || Sbjct 790631 GTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 790572 Query 116352 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 116411 | ||||||| ||| | || | ||| | | | || | || || ||| || Sbjct 790571 ACGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATC 790515 Query 116412 AT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 | ||| | || || || | || || || || || |||| | ||| || Sbjct 790514 GTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGG 790455 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 || |||||| |||||||| || |||| || || || ||||| || | |||||| Sbjct 790454 GGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTT 790395 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 ||| || ||| ||| || ||||||||||||||||| |||| | || ||||| || Sbjct 790394 TTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGT 790335 Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCG 116645 |||| || ||||| || | ||| | || | | || | | || | ||| || | Sbjct 790334 CTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTTG 790277 Query 116646 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGA 116704 ||||||| |||||||||| ||| || ||||| ||||| || || ||| || | || Sbjct 790276 -CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTC-TCCGTAGCAGTCGGCGA 790219 Query 116705 GCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 | || || || | || || | || | ||| | || || ||||| ||||||| Sbjct 790218 GGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCA 790159 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824 |||| || || |||||||| || || ||| || || || || | || || | | Sbjct 790158 TGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTAC 790099 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | || || ||| | || | || || | || ||| | |||||| || || ||||| | Sbjct 790098 CGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGA 790039 Query 116885 CCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 || | | ||| | || | | ||| |||||| ||||| | || || ||| Sbjct 790038 TGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTG 789980 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAG 116998 || || |||||||| |||| | ||| | ||| || || || || ||| || ||| Sbjct 789979 AAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAG 789920 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | | || | || | ||| | || || ||||||||| || ||| ||| ||||| Sbjct 789919 CC--AGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCA 789862 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 || || | ||||| | ||||||| || || || ||| |||| | | | | Sbjct 789861 TGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCA 789802 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 |||||| |||| ||| ||| || || || ||||||||||| || || | || | Sbjct 789801 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCAT 789742 Query 117179 GGATGAACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTC 117236 | |||| | | || ||||||| | ||| ||||||||||| || || || Sbjct 789741 GTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATC 789684 Query 117237 CCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACC 117296 || |||||| | || || ||||| | ||||| || || || | | |||| Sbjct 789683 ACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACC 789624 Query 117297 ATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 || | | | ||||||| |||||| ||||||| ||||| || Sbjct 789623 GTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 789576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503457606080