Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq13 239 6e-58 seq126 167 3e-36 seq476 93.3 5e-14 >seq13 Length=1380456 Score = 239 bits (264), Expect = 6e-58 Identities = 431/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 1182836 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTAGACTTGACCTCGAAGATACCC 1182895 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || ||||||||||| || || || ||||| ||| Sbjct 1182896 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 1182955 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| || || || || || || || || Sbjct 1182956 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 1183015 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || ||| ||| || || || || | ||||| || || ||||| || Sbjct 1183016 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTAGCTTGACGC 1183075 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||||| |||||||| ||||| || || || |||| |||| ||| ||||| Sbjct 1183076 TGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCGAGG 1183135 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || | ||| | || ||||| || | | Sbjct 1183136 TAAGACTCGGCGGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTG 1183195 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || || ||||| || || |||| ||| || | | | Sbjct 1183196 AAGGTCTTGGTCTCGCCCTTGAACTCAACCTCGATGTTGGGCTTA---CCACCCTTGTCG 1183252 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | ||| | | | | ||||| ||| | ||||||| | || | ||||| | Sbjct 1183253 ACGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGA 1183312 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| || || || || ||||| | |||||||||||| ||||||||| Sbjct 1183313 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATGGCGACTTGGTTCTTG 1183372 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || ||||| | || ||||| ||| Sbjct 1183373 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 1183429 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || |||||||| || || || || Sbjct 1183430 CGGTTACCCTGGTCGTTGGCGATGATATC 1183458 >seq126 Length=133157 Score = 167 bits (184), Expect = 3e-36 Identities = 368/545 (68%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| || ||||| ||||| | ||| || | |||||| | | || Sbjct 110429 AGGTCCTCGAAACGGGCGCGGGTGATGGACATGGTGAAGTCCTCACCGTCGAAGAGAGAG 110370 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| | || ||||| || |||||||| | Sbjct 110369 TCAATCTCAATGGTGGCCTGAGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAG 110312 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || |||||||| | | || || | || ||||| || || Sbjct 110311 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTCGTCTTTCGGC 110252 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 ||||| | | |||| |||| |||| | | |||||||| | ||||||||||| Sbjct 110251 CGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGTCCACCCAAGTGG 110193 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 ||||| || ||||| || ||||| |||| ||| || | ||||| | | || ||| Sbjct 110192 GTATCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACA 110133 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | ||||| ||||| || | ||| | |||| Sbjct 110132 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTA 110076 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| || || || || || || || || || || ||||| || | Sbjct 110075 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACG 110016 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || || || || ||||| |||||| Sbjct 110015 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 109956 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | ||| ||||| ||||| | | || || || || Sbjct 109955 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 109896 Query 7775 TTCAT 7779 ||||| Sbjct 109895 TTCAT 109891 >seq476 Length=1205600 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 282320 ATCGAAATCCTCACCACCGAGATGAGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 282261 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 282260 GTCATCAATGGAGAGGAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 282204 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 282203 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 282145 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 282144 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 282085 Query 7695 GTTG 7698 | || Sbjct 282084 GCTG 282081 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || | Sbjct 282020 CGTTGAAGTAGGCAGGGACGGTGACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 281961 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| ||||||||| | || ||||| |||| | ||||| | Sbjct 281960 CGGCGACCTCCTTCATCTTGCCAAGAACCATAGCAGAGATCTCCTCAGGAGTGAACTGCT 281901 Query 7824 TC 7825 || Sbjct 281900 TC 281899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128925689920