Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq473 349 6e-91 seq445 190 4e-43 >seq473 Length=938315 Score = 349 bits (386), Expect = 6e-91 Identities = 1154/1767 (65%), Gaps = 102/1767 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| || || || ||||||||||| ||||| Sbjct 791401 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTG 791342 Query 212613 AGGCC---CTTGCCCCAGCCGTGCAT-GTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 ||||| ||| |||||| |||| |||||| |||| |||| | || | Sbjct 791341 AGGCCAAGCTT---CCAGCC-TGCAAAGTGCATACTGGTGA---TCTTGCCC---ATCGT 791292 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | | |||| | |||||| ||||| ||| || ||||| | | Sbjct 791291 GGGGTCCTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAAGGCACC 791241 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||||| ||||| | | || | | ||| |||| |||||| |||||||| | | Sbjct 791240 TCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAG 791181 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | ||| |||||||| | || || || |||| Sbjct 791180 AGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAG 791128 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | ||| ||||| | Sbjct 791127 CAATG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC 791069 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| ||||| | ||| || | | ||||| | ||| || Sbjct 791068 AGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAG 791009 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| Sbjct 791008 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATA 790949 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TC 213076 ||||| | || |||||||| | | ||||| | | ||| | ||||| || Sbjct 790948 GGAGCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTC 790892 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||||||||| | |||| | ||| |||||||||||||| ||||| | Sbjct 790891 T-CCCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATGTCGAACTGGAG 790842 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 ||| || |||| ||||| || | | | | ||||||||| || | |||||| | Sbjct 790841 GATACC----CTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAG 790786 Query 213193 CCAGCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||| ||| ||| || |||||||||| ||| ||||| || || |||| | ||||| Sbjct 790785 CCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTG 790727 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| ||||||||| || |||| |||| || || Sbjct 790726 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGG 790667 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 ||||| || || | || ||||||| ||| | || |||| ||| |||| ||||| | Sbjct 790666 CCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGAC 790608 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| ||| |||||||||||||| ||||| || | | || | |||| | Sbjct 790607 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTACGAATAACAACCTGACTGACCTT 790548 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAG 213484 | || || | ||||| |||||| | ||| | | || ||||| Sbjct 790547 GTGCA---AC---TTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAG 790494 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 || | ||| |||||||| || || ||||| | || | | |||||| || || || Sbjct 790493 AGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTC 790434 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 |||||||||||| || ||||||||| || ||||||| ||| ||| ||||| | || Sbjct 790433 AGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG-TTGCTCTTGCGGTTGC 790375 Query 213605 A-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||||||||||| | ||| |||||||| ||||| | | || || | Sbjct 790374 AGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGT 790315 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | ||||||| | | ||| | | | | |||||||| || Sbjct 790314 ACCAAAGTTTCTGAGCCTTGA-TAGTCTTGCGACCCTTGCCCTCCT--TCTCGTACTTTT 790258 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783 |||| || | | ||| || | || || | | || || || || ||| | Sbjct 790257 CGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 790198 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 |||| || ||||||| |||| | | || | || |||||| || || |||| ||| | Sbjct 790197 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 790138 Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTA 213903 | ||| ||| ||||| | || | ||| || || ||| || || ||||| | Sbjct 790137 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 790078 Query 213904 GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCC 213960 | || || |||| || | |||||| ||||| | |||||||||||| || || | || Sbjct 790077 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 790018 Query 213961 TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGT 214016 | ||||| |||||||| | | | || | || ||||||||| || || | || Sbjct 790017 TGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGA 789962 Query 214017 ACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGG 214073 || | ||||| || ||| |||||||| || || || || ||||| | || | | | Sbjct 789961 ACAACACCGTTCGA-TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACG 789903 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 ||| | | ||| || || ||||| || ||||||||||||||| ||| | | | | Sbjct 789902 GTGCACGTTCAGA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGA 789845 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193 || || ||| || | || ||||| || | | | | ||||||||| || | Sbjct 789844 GTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAAT 789785 Query 214194 TGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTA 214253 |||||| | | ||| | |||||| |||||||| |||||| | | || ||| | Sbjct 789784 TGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTG 789725 Query 214254 GAGAGGAGCCTGTAGGTCTCCAGGACT 214280 || | || |||| ||||||| |||| Sbjct 789724 GACATCAGGTTGTATGTCTCCAAGACT 789698 >seq445 Length=2036916 Score = 190 bits (210), Expect = 4e-43 Identities = 489/737 (66%), Gaps = 27/737 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 111709 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 111650 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | | | || | Sbjct 111649 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCT-TCTCGTTGCCAAGCGCGACAAGGA 111591 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| ||||| | |||||| ||||||||| | |||| Sbjct 111590 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGATCAGAGTTCATGCCGAGAAGGG 111531 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | ||||| ||||| ||||||| ||| || ||||| || | || | Sbjct 111530 CGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATAT 111471 Query 48078 GCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCAT 48129 || || | |||| ||| || ||| | | ||| | | ||| | Sbjct 111470 CCT------GGATCATCTGC----TTGCTG-GCACGACCCTTGAGGTGAGAGTGGAGGAG 111422 Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||||||||| |||| | || || || || ||||||| ||||||||||| || Sbjct 111421 GCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 111362 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||| ||||||| || | || ||||||||||| || | ||||| | ||| |||||| Sbjct 111361 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAA 111302 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| ||||| || || ||||| || ||| | || | || || | || ||| || Sbjct 111301 GATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTG 111242 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 111241 GATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTT 111182 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTA 48426 ||||| | | | || | | ||| | ||||| | ||||||| | ||| Sbjct 111181 AAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAG---GGAGTA 111125 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| Sbjct 111124 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGG 111065 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 | ||| || || ||||| ||| | || ||||| ||||| || ||||| || || Sbjct 111064 GATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGC 111005 Query 48547 AGCAAAGAAGGCAAGGA 48563 ||| ||||| ||||||| Sbjct 111004 AGCGAAGAAAGCAAGGA 110988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527117649920