Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq473 250 2e-61 seq438 140 3e-28 seq471 118 1e-21 seq368 104 2e-17 >seq473 Length=938315 Score = 250 bits (276), Expect = 2e-61 Identities = 1010/1568 (64%), Gaps = 45/1568 (3%) Strand=Plus/Minus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | | || || ||||| ||||| || ||||| || || Sbjct 791086 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 791027 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | |||| || | || || || ||||||||||||||| |||||| | | Sbjct 791026 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 790967 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | ||||| ||| || | ||| | | | || Sbjct 790966 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTG-TGTCTTGAC 790908 Query 148413 TTGCGCT-TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 || | || |||| | ||||||||||||| || || | ||||||||||||||| | Sbjct 790907 TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATGTCGAA 790848 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||| || || || |||||| || | | | | | ||| || || | | || Sbjct 790847 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 790788 Query 148532 CGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | ||| | || ||| || ||| |||||| |||||| || ||| ||| Sbjct 790787 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 790729 Query 148591 TGAGC---AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||| | ||| || | | ||| | ||||| ||||| | || || |||| Sbjct 790728 TGAGCTCACGAGCC-TCGGGTGAC--TCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGG 790672 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 |||||||||| || || | |||||||| ||||| ||||| | ||| || || Sbjct 790671 CAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCT 790612 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || || |||||||| ||||||||||||| || || || | || |||| | | Sbjct 790611 GGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTACGAATAACAACCTGACTGA 790552 Query 148768 TTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TA--CGATGCATCGGTTCACGG 148821 || ||| | | || ||||| | | ||||| || |||| | | || | Sbjct 790551 CCTTGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAG 790492 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 | | |||||| || ||||| || || ||| || ||||| | |||||| | || || | Sbjct 790491 CCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAG 790432 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 |||||| ||| || | ||| || | ||||||||| |||||||||| |||||| | Sbjct 790431 TGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGG 790372 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACC 148998 | |||||||| |||||| | || || || || ||| | || | || | ||| Sbjct 790371 CATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACC 790312 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA-- 149050 | || | ||| || |||| | || | |||| ||||||| |||||| Sbjct 790311 AA---AGTTTCTGAGC-----CTTGATAGTC-TTGCGACCCTTGCCCTCCTTCTCGTACT 790261 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 | ||| | ||| ||||||| |||| |||||||| ||| |||| || ||||||| || Sbjct 790260 TTTCGTACAGAGC--CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTT 790203 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 |||||||| |||| ||| |||||| | | || |||||||| || ||||| || | Sbjct 790202 GGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGAT 790143 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 ||| || ||| | ||||| || || | || || || ||| || || Sbjct 790142 CCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAG 790083 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 790082 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 790023 Query 149291 GCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 ||| ||||| ||||||||||| | ||| | ||||||| || || |||| |||||| Sbjct 790022 TCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 789963 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTT 149407 ||| || | | || ||||| ||| | ||| ||| || || | Sbjct 789962 AACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACG 789903 Query 149408 GTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCG 149466 ||||||||| | || || || || ||| | ||| ||||| || ||| ||| | Sbjct 789902 GTGCACGTTCAGACCAATACCACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGAG 789844 Query 149467 TCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTT 149526 | |||||| ||||| || |||||| |||||| | || ||||| || ||| || Sbjct 789843 TATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATT 789784 Query 149527 GCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGG 149585 | || | | |||||||| ||| | ||||| ||| ||||| || |||| |||| Sbjct 789783 GGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGG 789724 Query 149586 CTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCG 149645 ||||| | ||| | ||| | || || || || ||||| || || || | | Sbjct 789723 -ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGAC 789665 Query 149646 ACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG 149705 || ||||| | ||| ||||| || ||||| | | || |||| ||||| | ||| Sbjct 789664 ACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAT 789605 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATG 149765 || | |||||| |||||||||| | ||| | || |||||| | | | ||||| Sbjct 789604 GATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATG 789545 Query 149766 GCGGCGTC 149773 || | ||| Sbjct 789544 GCAGAGTC 789537 >seq438 Length=150773 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 38298 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGC 38356 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| || |||||||| |||||||| |||||| || Sbjct 38357 CAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 38416 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 38417 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 38476 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 38477 TCTTGACGAAAATCTGCAT 38495 >seq471 Length=1798895 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 91702 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 91761 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | || |||||||| || || ||||| |||||||| ||||| |||| Sbjct 91762 GCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 91821 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || |||| ||||| ||| |||||||||| || Sbjct 91822 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 91881 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 91882 TTGACGAAGATCTGCATG 91899 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || | |||||| || Sbjct 90964 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAACTGCTTACC 91022 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || || || || |||||||| ||||| ||| Sbjct 91023 AGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTT 91082 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| ||| ||| || || | ||||| ||| || ||||| ||||| Sbjct 91083 CACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 91142 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 91143 CTTCACAAAAATCTGCAT 91160 >seq368 Length=1727344 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || || ||||| ||||| || || ||||| |||||| Sbjct 1127668 TCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 1127609 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 1127608 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 1127549 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 1127548 GTCTTGCCCGTCAGGGTCTTCACGAAA 1127522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417851133120