Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq473 228 1e-54 seq445 129 7e-25 seq346 82.4 1e-10 >seq473 Length=938315 Score = 228 bits (252), Expect = 1e-54 Identities = 1144/1788 (64%), Gaps = 51/1788 (3%) Strand=Plus/Minus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| || ||| Sbjct 791404 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 791345 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | || | |||||| | || |||| |||||| || Sbjct 791344 TTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 791286 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 791285 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 791228 Query 110501 ATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560 || | || ||| | | || |||||||| || ||| ||| ||||| ||| Sbjct 791227 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCG 791168 Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATA 110620 | ||||| | | || ||||| |||||||| | | | ||| | | ||||||| Sbjct 791167 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATA 791108 Query 110621 TCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACA 110680 | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 791107 GCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGG 791048 Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||| ||||| | || |||||||||| | ||||| || || ||||| || Sbjct 791047 AACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCG 790988 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || || |||| || || | ||| ||| || ||||| || || | | ||||||||| Sbjct 790987 TTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTA 790928 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--AGCT 110855 || | || | ||||| ||||| ||| | |||||||| || | || Sbjct 790927 CGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG 790871 Query 110856 TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAA 110915 || || || |||| ||||||| ||||| || | || | || ||||| ||||| | | Sbjct 790870 -GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGA 790813 Query 110916 AGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGA 110974 |||| |||| ||| | | | ||||| | ||| | || |||| ||||| Sbjct 790812 AGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGTGG 790754 Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034 || ||||| || ||||| | || | ||| || || ||| || || | | Sbjct 790753 TAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 790694 Query 111035 CGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 || || | || || |||| || || || |||||||| | |||||| |||| ||| || Sbjct 790693 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 790635 Query 111094 CATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 111153 ||| ||| || || || || || || || || || |||| ||| || Sbjct 790634 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 790575 Query 111154 ATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGTCT 111212 || |||||| || ||| | || || || || | | || | || || || Sbjct 790574 GTTACGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAGCCT 790519 Query 111213 CTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 | || | ||| | || || || | || || | ||||| ||||| ||| | Sbjct 790518 CATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGT 790459 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 | | |||||| | |||||| || || | |||||| || || || || | | Sbjct 790458 CAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGT 790399 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 |||||||||| ||||| |||||| |||||||||||||||||| | || | || |||| Sbjct 790398 TCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCT 790339 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGC 111447 | ||||| | | ||||| || | ||||| || | | | || || | || | | Sbjct 790338 CAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGC---GAC 790282 Query 111448 CCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG 111506 || | |||||| |||||||||| ||| || || || |||||||| || ||||| Sbjct 790281 CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGG 790222 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCT 111566 ||| || || || || || || | || | ||| | || | ||||| |||| Sbjct 790221 CGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCT 790162 Query 111567 TCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTT 111623 |||||||||| || || ||||| ||| || |||| || || | ||| || |||| | Sbjct 790161 TCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGGCACGGA-CCTCCT 790105 Query 111624 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 | | ||| ||||| || | ||||||||||| | || ||| | |||||| ||||| | Sbjct 790104 CTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGA 790045 Query 111684 GATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGG 111740 | |||| || | || || ||| ||| | || | |||||||| || ||| Sbjct 790044 GGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGT 789985 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-AT 111798 ||| || || |||||||| |||| || ||| | ||| ||| || || || ||| | Sbjct 789984 TGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGT 789925 Query 111799 ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 111858 | ||| | | || | | | || | || || |||||||| |||||| ||| || Sbjct 789924 AGGAG--CCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGA 789867 Query 111859 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 111918 ||| ||||| | | ||||| | ||||| || | || ||| ||||| | | Sbjct 789866 GATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATC 789807 Query 111919 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 111978 | | ||||||| |||| || || || || || || |||||||| || || | Sbjct 789806 AACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGA 789747 Query 111979 TGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 112036 || || |||| | | || ||||||| || ||||||||||||||| || || Sbjct 789746 GGCATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATA 789689 Query 112037 TCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || || || | | || ||||||| ||||| ||| ||| Sbjct 789688 TCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGG 789641 >seq445 Length=2036916 Score = 129 bits (142), Expect = 7e-25 Identities = 335/504 (66%), Gaps = 20/504 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 111705 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 111646 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484 ||||| || || || | || || ||| | | || || | | || ||| Sbjct 111645 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 111592 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || |||||||||||| ||| ||||||||||| |||| ||| Sbjct 111591 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGATCAGAGTTCATGCCGAGAAGG 111532 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || || || || || || |||| | | |||||| || || || | | ||| Sbjct 111531 GCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 111472 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | ||||| | | | ||| | | || | || | || ||| || |||| Sbjct 111471 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 111415 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| ||||||||||| || || || || || || |||||| ||||| ||| Sbjct 111414 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 111355 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||| Sbjct 111354 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 111295 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCA 122840 || ||| || || |||| || || | ||| |||||| ||| ||| | | | ||| Sbjct 111294 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 111236 Query 122841 TTTCATTGCCCATTTCGCCTTCTT 122864 | || ||||| | |||||||| Sbjct 111235 TCGGATGGCCCAGTCGGCCTTCTT 111212 >seq346 Length=1362477 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 1068909 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 1068968 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || || | ||||| ||| | |||||||| || || Sbjct 1068969 GTGTCATCGATGCCGATTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 1069028 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 1069029 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 1069081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028169004800