Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20[genbank_20GCA_5F002233995.1_202017-07-27] 488 sequences; 47,233,678 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq438 129 4e-25 seq471 122 6e-23 seq368 100 2e-16 >seq438 Length=150773 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| ||| || ||| | || || Sbjct 38287 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 38346 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || ||||| ||| Sbjct 38347 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 38406 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || |||||||| Sbjct 38407 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 38466 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| ||||| || ||||| Sbjct 38467 CCCGTGAGGGTCTTGACGAAAATCTGCAT 38495 >seq471 Length=1798895 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| || ||||||||||| | ||| ||| |||| || Sbjct 91690 ACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCA 91749 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || ||||| || ||||| || | || | || ||||| ||| Sbjct 91750 AGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 91809 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||||| || || ||||| | || || |||| Sbjct 91810 ATCTTGGACTTGACATTGT--CGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 91867 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || | |||||| |||||||| ||||||||| Sbjct 91868 TGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 91902 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG-GCGAGTTGGCGCTCGTCGTC 44187 || |||||||| || |||||| ||||||||||| ||| | || | ||| | || || Sbjct 90952 ACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGT-GCGACCATCTTC 91010 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 91011 CAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTG 91070 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||| ||| || ||||| | || || ||||| Sbjct 91071 AATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTT 91130 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| |||||||| || || ||||| Sbjct 91131 TCCGGTGAGAGTCTTCACAAAAATCTGCAT 91160 Score = 109 bits (120), Expect = 4e-19 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 |||| ||| || || ||||| || |||||||| |||| ||||| | || | || | Sbjct 91180 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCG-GC-CATCCT 91237 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || || ||||| | ||||| ||||| | ||| | ||| ||||| ||| Sbjct 91238 CAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCT 91297 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| |||| || || || |||| ||||| |||| Sbjct 91298 GGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCT 91357 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 91358 TCCCAGTGAGGGTCTTGACGAAGATCTGCAT 91388 Score = 105 bits (116), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||| || |||||||| ||||| || || |||| || Sbjct 91408 ACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCG 91467 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||| |||||||| || | ||| | ||| ||||| ||| Sbjct 91468 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGA 91527 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| || || ||||| | || || |||| Sbjct 91528 ATCTTTGACTTAACATTGT--CGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCT 91585 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || ||||||||||| |||| Sbjct 91586 TGCCAGTGAGGGTCTTGACGA 91606 >seq368 Length=1727344 Score = 100 bits (110), Expect = 2e-16 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| || || |||| Sbjct 1127703 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 1127644 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||| || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 1127643 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1127584 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 1127583 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1127526 Query 44326 GAA 44328 ||| Sbjct 1127525 GAA 1127523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988258957096