Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq1302 140 7e-28
>seq1302
Length=29391
Score = 140 bits (154), Expect = 7e-28
Identities = 316/468 (68%), Gaps = 8/468 (2%)
Strand=Plus/Minus
Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229
|| |||||| |||||||||| |||| | |||||| ||||| || | ||| | | ||
Sbjct 20963 TCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTAT-CT-TCTTCAGTG-GT 20907
Query 230230 TTCTGCGCC---ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 230286
|| |||| ||||| ||||| ||| ||| | ||||| || || | ||
Sbjct 20906 GCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCC 20847
Query 230287 AACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCA 230346
|||||| ||||| ||| || |||||||| || | || | | || | | ||
Sbjct 20846 AACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCC 20787
Query 230347 AAGCTCCAGAA-CAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405
| ||| || | || | || | ||| | || | | |||||||| || || ||
Sbjct 20786 CACCTCAAGGGTCGTGCCAGCAAGC-AGATGATCCAGGATATCATTACTGACGCTGTCAC 20728
Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGA 230465
| || |||||||| | ||| ||| |||| ||| |||| | ||||||||| ||||
Sbjct 20727 CATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGA 20668
Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525
|| ||| |||||||| || ||||| || || || | |||| || ||||| ||||
Sbjct 20667 CCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGA 20608
Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585
||| || ||||| | | |||||||| | || |||||| ||| || ||| || ||
Sbjct 20607 GAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAA 20548
Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633
||||||||||||||| |||||||| ||||| |||| | | |||||
Sbjct 20547 GACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGT 20500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057805431883100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |