Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1302 140 7e-28 >seq1302 Length=29391 Score = 140 bits (154), Expect = 7e-28 Identities = 316/468 (68%), Gaps = 8/468 (2%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || |||||| |||||||||| |||| | |||||| ||||| || | ||| | | || Sbjct 20963 TCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTAT-CT-TCTTCAGTG-GT 20907 Query 230230 TTCTGCGCC---ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 230286 || |||| ||||| ||||| ||| ||| | ||||| || || | || Sbjct 20906 GCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCC 20847 Query 230287 AACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCA 230346 |||||| ||||| ||| || |||||||| || | || | | || | | || Sbjct 20846 AACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCC 20787 Query 230347 AAGCTCCAGAA-CAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405 | ||| || | || | || | ||| | || | | |||||||| || || || Sbjct 20786 CACCTCAAGGGTCGTGCCAGCAAGC-AGATGATCCAGGATATCATTACTGACGCTGTCAC 20728 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGA 230465 | || |||||||| | ||| ||| |||| ||| |||| | ||||||||| |||| Sbjct 20727 CATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGA 20668 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| |||||||| || ||||| || || || | |||| || ||||| |||| Sbjct 20667 CCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGA 20608 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 ||| || ||||| | | |||||||| | || |||||| ||| || ||| || || Sbjct 20607 GAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAA 20548 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 ||||||||||||||| |||||||| ||||| |||| | | ||||| Sbjct 20547 GACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGT 20500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057805431883100