Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1302 269 3e-67
seq504 152 5e-32
seq737 123 3e-23
seq606 120 3e-22
>seq1302
Length=29391
Score = 269 bits (298), Expect = 3e-67
Identities = 551/809 (68%), Gaps = 16/809 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||| | |||||| | || ||
Sbjct 21356 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 21297
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| ||| | | | |||| ||| ||
Sbjct 21296 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTC 21238
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || || || ||||| ||| || || || ||||||||||| || ||||||||
Sbjct 21237 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 21178
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | ||||| ||| | ||||||| || |||||||||||||| |||||| ||
Sbjct 21177 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 21118
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927
||||||| | ||||| || | || || ||||| ||||| ||| | | || |
Sbjct 21117 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGC 21058
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | ||| || | | | | |||||||| ||||| || || ||| || | ||||||
Sbjct 21057 CCA--GCGAACCTACCTCTTT--AACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGG 21002
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
|||| ||||| | || |||||| | | || || |||| | | |||| || || |
Sbjct 21001 CCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 20942
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
||||||| || || ||||| ||||||| || |||||| | || || |||||||
Sbjct 20941 CCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCA 20882
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || || ||||||||||| ||||| ||| ||||||||||||||| | || ||||
Sbjct 20881 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 20822
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
|||| || ||||||||||| | || | || | | || | ||| |
Sbjct 20821 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCCCACCTCAAGGGTCGTGCCAGCAAGC 20762
Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287
| || ||| ||| | || ||||| ||| |||| |||||| |||||||| || |
Sbjct 20761 AGATGATCCAGGATATCATTACTGACGCTGTCACCATTGAGCAGGAGTTCCTCACTGAGG 20702
Query 117288 CGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346
| | | || |||| || || || | || | || ||| ||| ||||| ||||||
Sbjct 20701 CTCTTCCCTGTGC-CCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTC 20643
Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406
||||| || | || || ||| ||| | | || ||| ||||| | |||||||
Sbjct 20642 GTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCC 20583
Query 117407 CTGGACTTTATGAACCTCATCT-CCTTGG 117434
| ||||| ||| | ||||| ||||||
Sbjct 20582 TTCGACTTCATGGAGAACATCTCCCTTGG 20554
>seq504
Length=275141
Score = 152 bits (168), Expect = 5e-32
Identities = 163/213 (77%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || |||||||| || || |||||| | || || || |
Sbjct 23085 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 23144
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| ||||| || || | ||||| |||||||||||| | ||
Sbjct 23145 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 23203
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| |||||||||| || ||||| ||||| || || | |||||||| | ||||||
Sbjct 23204 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 23263
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||||||| |||| || || || ||
Sbjct 23264 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 23296
>seq737
Length=34572
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 19729 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 19670
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| ||||||| || |||||
Sbjct 19669 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 19610
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || ||||| || || | || || ||| |||||||||||||||||||
Sbjct 19609 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 19550
Query 40879 G 40879
|
Sbjct 19549 G 19549
>seq606
Length=53999
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| ||||||||| |||| || || | ||
Sbjct 5590 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 5649
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| || |||| ||||| |||||||| ||| | ||||||
Sbjct 5650 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 5709
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | || | ||| ||||| ||||| || |||| ||||| ||| || ||||||
Sbjct 5710 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 5769
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||||||| |||| || || || ||
Sbjct 5770 ATTCAGAAGGAGTCCACTCTTCACCTTGT 5798
Score = 111 bits (122), Expect = 2e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || ||||| || || ||||||||| | || ||||| |||
Sbjct 6328 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 6387
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || |||| ||||| ||||| || ||| | || ||
Sbjct 6388 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 6446
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || || |||| ||| || || ||| |||| || | |||||| | | |||||||||
Sbjct 6447 ACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAA 6506
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 6507 CATCCAGAAGGAGTCAACTCTTCACCTCGT 6536
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
||| |||| || || ||||| ||||| |||||||| | || ||||| | |||| | |
Sbjct 5878 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 5937
Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815
| | | | ||| ||| |||| ||||| ||||||||||| | |||||||| ||
Sbjct 5938 ATCGACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGC 5997
Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875
|| |||| || || || || || || |||| || ||||| |||||||||||| |||
Sbjct 5998 CTGATCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAG 6057
Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898
||||| | || || ||||| ||
Sbjct 6058 AAGGAATCTACCCTTCATCTCGT 6080
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || ||||| || | || ||||| | ||
Sbjct 6100 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 6159
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || || | ||||| ||||| || || | || ||
Sbjct 6160 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 6219
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| |||||||||| ||| ||||| || || || || | || || || ||||||||||
Sbjct 6220 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACAAC 6279
Query 40870 ATCCAGAAGGA 40880
|| ||||||||
Sbjct 6280 ATTCAGAAGGA 6290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515210376871200
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