Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq927 104 5e-17 >seq927 Length=143536 Score = 104 bits (114), Expect = 5e-17 Identities = 613/963 (64%), Gaps = 34/963 (4%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| || |||| ||| | | ||||| | ||| | | ||||| ||||| || Sbjct 91882 TGGACTCTGCCATTGTCTATGACCGCGATTTCCAATACCAATACTTTGGCTTCAAGACTT 91941 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 ||||| ||| || |||||||| ||||| || ||||| || || || |||||||||| Sbjct 91942 TGGAGCGATCATACCTCCTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCAGCACATGA 92001 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACA 248962 | ||||| ||| |||| || ||| ||||| || ||| | || | ||||| |||| Sbjct 92002 TCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTCTTGGAGACATACA 92061 Query 248963 CCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 | ||| || || || | |||||||| | || ||||||||||||||||| | Sbjct 92062 ACCTGATGTCCAGCAAATTCT---TCACACATGCTTCTCCCACGCTCTTCAACGCCGGCA 92118 Query 249020 -CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 || ||| | || || || ||||| | ||| ||| | |||||| | | || Sbjct 92119 CCCCTCAGC-CCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGACAGTATTGAG 92177 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || || || || | |||| || | ||| || || | || || || || Sbjct 92178 GGAATCTACGATACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATT 92234 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 ||||| ||| | ||||| || | || || |||||| ||||| || || | Sbjct 92235 GGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATCGCCGGTACCAA-CGGTAC 92293 Query 249196 AGTG-ATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCA 249254 | | | ||| | || || | ||||| ||| | ||| || | | || |||| Sbjct 92294 ATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATGTCGACCA 92353 Query 249255 GGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATAT 249311 || || | ||| || | || ||||| || | || |||||| | ||| | Sbjct 92354 GGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGATGT 92413 Query 249312 ATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCT 249371 || |||||||| || | |||||| |||| || ||| | | || |||||||| Sbjct 92414 CTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGACCT 92473 Query 249372 CTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTG 249431 ||| || ||| ||| || | || | |||||| || || | |||| || || Sbjct 92474 TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGTGACTG 92533 Query 249432 GACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTAC-ACGGCGCCGACTTCG 249490 |||||| | | || ||| ||| | |||| ||| || | |||| | || |||| Sbjct 92534 GACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGA-CTGCTACGGAGAGGAGTTCG 92592 Query 249491 ACCAAGC-CTATAAGAAA--TACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC 249544 | || || || |||| ||||| | |||| | ||||||| |||||||||| Sbjct 92593 ---AGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTATCAAGGCTC 92649 Query 249545 GGACCCTTT-TTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TT 249602 || |||| | || | | ||| |||||| ||||| || || | | || | Sbjct 92650 AGAAACTTTGGTACG-CCATTCTTGAGGCCCAGACTGAGACCGGAAACCCAT-TCATGCT 92707 Query 249603 GTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTC 249662 | ||| || || |||||| |||||| |||||| | | || ||||||||||| || Sbjct 92708 CTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTC 92767 Query 249663 AAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCT 249722 || || || | || | ||| | |||| || || ||| | || ||||||||||| Sbjct 92768 CAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTGCAACCT 92827 Query 249723 GGC 249725 || Sbjct 92828 TGC 92830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073747552044160