Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq927 284 1e-71
seq1302 136 4e-27
seq606 114 1e-20
seq504 107 2e-18
>seq927
Length=143536
Score = 284 bits (314), Expect = 1e-71
Identities = 637/954 (67%), Gaps = 2/954 (0%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|||||||| ||||| || || |||||||| || |||||| | |||||| || ||
Sbjct 92833 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCAC 92774
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || || | || | |||||||| || || ||||| | ||||
Sbjct 92773 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 92714
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || | || ||||| ||| | ||| | || || ||| |
Sbjct 92713 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGT 92654
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
||||||| | | | ||| || ||| ||| || | ||||||||||| ||||| ||
Sbjct 92653 TTCTGAGCCTTGATA-GTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 92595
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325
|| || || | ||||| |||||||| ||||| || | | | || ||||| || |
Sbjct 92594 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGT 92535
Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385
||| || |||||||| || |||| |||||||| || ||||| || ||| |||
Sbjct 92534 CCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAA 92475
Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445
|| || ||||| || ||||||||||| ||| |||||| | ||| | || || ||
Sbjct 92474 AAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 92415
Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505
|| || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| ||
Sbjct 92414 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 92355
Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565
||| ||||| || || || ||||||||| | || | ||||| || || | |||||| ||
Sbjct 92354 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 92295
Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625
| ||| || || | || || | || || | ||| |||| | |||
Sbjct 92294 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 92235
Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685
|| || || || || || ||||| || || || ||||| |||||||| |||||
Sbjct 92234 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 92175
Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745
|| ||||| || || | | |||||||| || || |||| ||| | | || || |
Sbjct 92174 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 92115
Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805
||| ||| || || || || || || ||| || | ||||| || ||||| ||
Sbjct 92114 GGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGT 92055
Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865
|| | | | || || || || || ||||| | | || ||||| |||||||
Sbjct 92054 CTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTG 91995
Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925
||||| | |||||| | |||| ||| |||| || ||||| || | || || ||
Sbjct 91994 CTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTT 91935
Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979
|| ||||| || | || | || || || || | || ||||| || | |||
Sbjct 91934 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 91881
>seq1302
Length=29391
Score = 136 bits (150), Expect = 4e-27
Identities = 542/838 (65%), Gaps = 25/838 (3%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|||||| | |||||||| ||||| || || || || ||||| | || || | || ||
Sbjct 21356 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 21297
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAATTTTA--TTAA 57685
|| |||||||| ||| ||| | || | || | | || ||| | || | |
Sbjct 21296 TCCAAGGATCTCCACGACTGGAACAACCGCCT-GACTGCCGATGAGCAGTTCTTCGTCTC 21238
Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745
||| | | || || ||||| || || ||||||||||| |||||||| | ||||| |
Sbjct 21237 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 21178
Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805
||| || || || | | ||||| | ||||| ||||| || || | ||
Sbjct 21177 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 21118
Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865
|| ||| | || || || | || || || ||||| || || ||| | ||||| ||
Sbjct 21117 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGC 21058
Query 57866 CGAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924
| || ||| || || || ||||| || || || || ||| ||| |||||||| |
Sbjct 21057 CCAGCGAACCTA-CCTCTTTAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCCG 20999
Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCG 57981
| ||| | ||| |||||| | | | || || | || ||| || | || | |
Sbjct 20998 ACTGGGCCATCCGATGGATCCA---GGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 20942
Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041
| ||||| || || || ||||| ||||| || ||| || | || || ||| | |
Sbjct 20941 CCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCA 20882
Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101
|||| || || || |||||||| ||||| || ||||||| | || || || || ||||
Sbjct 20881 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 20822
Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACCGACG 58157
|||| || ||||| ||||| ||||| | |||| ||| | ||| | | | |
Sbjct 20821 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCCCACCTCAAGGGTCGTGCCAGC-AAG 20763
Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217
| ||| ||| ||| || || || || || ||| | || || | ||||| ||||
Sbjct 20762 C-AGAT--GATCCAGGATATCATTACTGACGCTGTCACCATTGAGCAGGAGTTCCTCACT 20706
Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277
|| || || || ||| | ||||| |||||| ||| | ||| |||||||||||
Sbjct 20705 GAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAG 20646
Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAA 58335
|| || || || | || | ||| || | |||| || |||||| | | |
Sbjct 20645 TTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGT--TTACAAGGCCACCA 20588
Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393
| || || || || ||| | ||||| || | |||||||| ||||| ||||| ||
Sbjct 20587 ACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAA 20530
>seq606
Length=53999
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| || |||||| |||| ||||| | ||
Sbjct 5589 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 5648
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 5649 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 5708
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || | || ||||| ||||| ||| | || ||| ||| | ||||| ||
Sbjct 5709 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 5768
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || || || |||||||| || || ||
Sbjct 5769 CATTCAGAAGGAGTCCACTCTTCACCTTGTTCT 5801
Score = 102 bits (112), Expect = 7e-17
Identities = 156/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || |||||||| || || || || |||||| | || || || ||||
Sbjct 6328 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGA---GTCC 6384
Query 31253 ---GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|||| | |||| | || || | || ||||||||| || | || || ||
Sbjct 6385 AGTGACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGAT 6444
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|| |||||||| || |||||||| || ||||||||||| | || ||||||| ||
Sbjct 6445 CAACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTAC 6504
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||| || || || || |||||||| || || || ||||
Sbjct 6505 AACATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACT 6545
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/203 (70%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| ||||| || || ||||| || ||||| | || || || ||||||| | |||
Sbjct 5882 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCG 5941
Query 31263 AAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321
| | || || || ||| | ||||||||| ||| | || || ||||||||||| ||
Sbjct 5942 ACAATGTTAAGTCAAAGATTCA-GGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTG 6000
Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381
|| || ||||| || || | |||||| || | ||| || |||||||| ||
Sbjct 6001 ATCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAG 6060
Query 31382 GAATCGACTCTTCATCTGGTACT 31404
||||| || |||||||| || ||
Sbjct 6061 GAATCTACCCTTCATCTCGTCCT 6083
>seq504
Length=275141
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||||||| | || || || |
Sbjct 23085 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 23144
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 23145 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 23204
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||||| || || || |||||||| ||| | || || | | | || ||||||| ||
Sbjct 23205 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA-TGGACGCACCCTGAGCGACTA 23263
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || || || || ||||| ||
Sbjct 23264 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 23299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445758766250400
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