Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2 02016-07-29] 1,370 sequences; 46,735,106 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq927 206 4e-48 seq1302 109 8e-19 >seq927 Length=143536 Score = 206 bits (228), Expect = 4e-48 Identities = 601/914 (66%), Gaps = 20/914 (2%) Strand=Plus/Minus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || ||||||||||| ||||| | ||||| || | || | ||| || ||||| Sbjct 92788 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 92729 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 ||| || |||||||| || || ||||| || | || || ||| |||| | || | | Sbjct 92728 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 92669 Query 79786 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TC 79841 || || | ||| | | || ||||||| || || |||| | ||| | ||| || Sbjct 92668 ATGGCGTACCAAA-GTTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTC 92613 Query 79842 GTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||| | | ||| | | | |||||||| ||||| | ||| | | ||||| || Sbjct 92612 GTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCAC 92555 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGAT 79957 |||| || ||||||| || ||| || || | || ||| || || ||||| || |||| Sbjct 92554 TCGTTGGGGCACATCAGCGTCCAGTCACCGT--TCTTTTCAACACGCTTCATGAAAAGAT 92497 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||| |||||||| || | || || || | || | |||||| || || |||| Sbjct 92496 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCT 92437 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | | Sbjct 92436 TACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 92377 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || ||||| ||||| || ||||| || | || | ||| ||||| || | || | | Sbjct 92376 CACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAA 92317 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| |||| || ||| || |||||||| ||||| |||| ||| ||| ||| | |||| Sbjct 92316 GCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCAC 92257 Query 80198 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 | ||| | | || | |||| || || || ||||| || ||||| | || || Sbjct 92256 GGATACGGTGCACGTTCA--GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGT 92199 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || | ||||| ||||| ||||| || || || || |||| | || | || || Sbjct 92198 CTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGA 92139 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 |||| |||| | || || || || || || | || |||||||| || || || | Sbjct 92138 TGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAA 92079 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 ||| |||| || ||||| ||||| | || || ||||| ||| || Sbjct 92078 TTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACC 92019 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495 || | |||||||| | |||||||||||| | || || ||||| | || || | Sbjct 92018 AACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAG 91959 Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 | ||| ||| |||||||| || || ||||| || | |||| || || || || || Sbjct 91958 GAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATA 91899 Query 80556 AATAATAACCGAGT 80569 | ||| | |||| Sbjct 91898 GACAATGGCAGAGT 91885 >seq1302 Length=29391 Score = 109 bits (120), Expect = 8e-19 Identities = 353/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| |||||||| || | | || || |||||||| || || || |||||||| || || Sbjct 20814 GTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 20873 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || || || || || | ||| |||||||| || || || || Sbjct 20874 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 20933 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCA-CTTTTGAG 50149 || |||||||| || | || || | || | | || || ||||| | || | Sbjct 20934 AGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 20992 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| |||||||||||| | || || || || || ||||| |||||||| ||| || Sbjct 20993 CCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGGTAGGTTC 21052 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | || || | || || || || | || || | || || || |||| Sbjct 21053 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 21112 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 21113 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 21172 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 21173 TGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAAGGA 21232 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || | || | || | || || | | || ||||| || | || ||| | Sbjct 21233 TGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCT 21292 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 21293 TGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 21352 Query 50507 AGAT 50510 | || Sbjct 21353 AAAT 21356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718256499646800