Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq606 100 2e-16
>seq606
Length=53999
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
||||| ||| |||||| |||||||||||||||| | | || || ||||||| |||||
Sbjct 5792 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTG-CGGCCGTCCTCAAGCTG 5734
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| || |||| || || ||||| || || | | ||||||||| ||| ||
Sbjct 5733 CTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTT 5674
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | || || |||| |||||| ||||| || ||||| || |||||
Sbjct 5673 GGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 5614
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
| || || || || ||||||||
Sbjct 5613 CAAGGTCTTGACGAAGATCTGCAT 5590
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| || |||||| || |||||||| || ||| || | || |||| ||||
Sbjct 6530 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGC 6471
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
||||| || | || | |||||| ||||| || | || ||||||||| ||| ||
Sbjct 6470 TTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTG 6411
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||| | | | || || || || | ||||| ||| | || ||||| || ||||
Sbjct 6410 CTCTTCACGTTGTCGATA--GTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGG 6353
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
||||||| |||||||||||||||||
Sbjct 6352 TGAGAGTCTTCACAAAAATCTGCAT 6328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421244166421370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |