Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq927 194 2e-44
>seq927
Length=143536
Score = 194 bits (214), Expect = 2e-44
Identities = 576/881 (65%), Gaps = 12/881 (1%)
Strand=Plus/Minus
Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886
|||||| || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 92759 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 92700
Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 62945
||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| |
Sbjct 92699 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 92641
Query 62946 TTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCGAACTCGT 63002
| || ||| | ||| | ||| ||||| | |||| |||||||| |
Sbjct 92640 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 92584
Query 63003 CTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63062
|||| | | | | || ||||| || || | || ||||||| || ||| || ||||
Sbjct 92583 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGT 92524
Query 63063 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 63122
| | || || ||||| || |||||||| |||||||| || | || || || | ||
Sbjct 92523 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 92464
Query 63123 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182
| ||||| || || ||||| ||||| |||||| | | | |||||| |
Sbjct 92463 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 92404
Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242
|||| || || | ||| ||||| | | | || || || ||||| || ||||| || | |
Sbjct 92403 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 92344
Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302
| | ||| ||||| || | || | | ||| |||| || ||| || |||||||| ||||
Sbjct 92343 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 92284
Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCC 63360
| || | ||| ||| ||| | ||||| ||| | | || | |||| || || ||
Sbjct 92283 TACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACC 92226
Query 63361 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 63420
||||| || ||||| | || || || | ||||| ||||| ||||| ||||| ||
Sbjct 92225 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 92166
Query 63421 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63480
||| |||| | || | || || |||| |||| | || || || || || ||
Sbjct 92165 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 92106
Query 63481 TAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63540
| || |||||||| || || || |||| || | || ||||| ||||| | |
Sbjct 92105 GAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 92046
Query 63541 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63600
| || ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 92045 TCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCG 91986
Query 63601 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63660
|| || ||||| || || || | | ||| ||| |||||||| || || |||||
Sbjct 91985 CTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAA 91926
Query 63661 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701
|| | |||| || || || || || | ||| | ||||
Sbjct 91925 GTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 91885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633621149052000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |