Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cubense_20[genbank_20GCA_5F001696625.1_2
02016-07-29] 1,370 sequences; 46,735,106 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq606 114 1e-20
>seq606
Length=53999
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | ||||| || ||||||| | || || ||||| |
Sbjct 6328 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 6387
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||||||||| ||||| || || ||||| || || ||||| ||||| |||
Sbjct 6388 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAA 6447
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| |||| || || || || || || ||||||| |||||| || |||| |||||
Sbjct 6448 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 6507
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || || || || ||
Sbjct 6508 ATCCAGAAGGAGTCAACTCTTCA 6530
Score = 111 bits (122), Expect = 1e-19
Identities = 151/206 (73%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||||||| || ||||||| |||| || ||||| ||
Sbjct 5590 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 5649
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||||||||| || || ||| | || | ||| ||||| || || ||||| || |||
Sbjct 5650 GACACTATCGA--CAATGTCAAGTCCAAGATTCA-GGACAAGGAGGGCATTCCCCCCGAC 5706
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || | ||||| |||||||| || | || || | |||||| | ||||||
Sbjct 5707 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 5766
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
|| ||||| || || ||||| || ||
Sbjct 5767 AACATTCAGAAGGAGTCCACTCTTCA 5792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433320764776550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |